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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaaggatggattatgctaccttttgccctcattgtgaatacgtgttaattgactggttaatgtttgatctaatgttgagtgtgtattctatccatgcagACCAAAGGCAGTCAATTGTCTGAGGTGATGACAACAGCTAGTAGCGAGGCAATTGACCTCATCTCA

Basic information

species Zea mays
transcript GRMZM2G178822_T02
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60345317|gb|DN212290.1|DN212290
EST:     GGCCTCAAGGATTGTCTCTTGCAGAAGCAATGAAGTATCAGTTCCCACAG                         ACCAAAGGCAGTCAATTGTCTGAGGTGATGACAACAGCTAGTAGCGAGGCA
genomic: GGCCTCAAGGATTGTCTCTTGCAGAAGCAATGAAGTATCAGTTCCCACAGgtcaatattc ... atccatgcagACCAAAGGCAGTCAATTGTCTGAGGTGATGACAACAGCTAGTAGCGAGGCA
EST: gi|31361016|gb|CD445373.1|CD445373
EST:     GGCCTCAAGGATTGTCTCTTGCAGAAGCAATGAAGTATCAGTTCCCACAG                         ACCAAAGGCAGTCAATTGTCTGAGGTGATGACAACAGCTAGTAGCGAGGCA
genomic: GGCCTCAAGGATTGTCTCTTGCAGAAGCAATGAAGTATCAGTTCCCACAGgtcaatattc ... atccatgcagACCAAAGGCAGTCAATTGTCTGAGGTGATGACAACAGCTAGTAGCGAGGCA
EST: gi|67015254|gb|CO444003.1|CO444003
EST:     GGCCTCAAGGATTGTCTCTTGCAGAAGCAATGAAGTATCAGTTCCCACAG                         ACCAAAGGCAGTCAATTGTCTGAGGTGATGACAACAGCTAGTAGCGAGGCA
genomic: GGCCTCAAGGATTGTCTCTTGCAGAAGCAATGAAGTATCAGTTCCCACAGgtcaatattc ... atccatgcagACCAAAGGCAGTCAATTGTCTGAGGTGATGACAACAGCTAGTAGCGAGGCA
EST: gi|60352824|gb|DN219797.1|DN219797
EST:     GGCCTCAAGGATTGTCTCTTGCAGAAGCAATGAAGTATCAGTTCCCACAG                         ACCAAAGGCAGTCAATTGTCTGAGGTGATGACAACAGCTAGTAGCGAGGCA
genomic: GGCCTCAAGGATTGTCTCTTGCAGAAGCAATGAAGTATCAGTTCCCACAGgtcaatattc ... atccatgcagACCAAAGGCAGTCAATTGTCTGAGGTGATGACAACAGCTAGTAGCGAGGCA
EST: gi|211493408|gb|FL041695.1|FL041695
EST:     GGCCTCAAGGATTGTCTCTTGCAGAAGCAATGAAGTATCAGTTCCCACAG                         ACCAAAGGCAGTCAATTGTCTGAGGTGATGACAACAGCTAGTAGCGAGGCM
genomic: GGCCTCAAGGATTGTCTCTTGCAGAAGCAATGAAGTATCAGTTCCCACAGgtcaatattc ... atccatgcagACCAAAGGCAGTCAATTGTCTGAGGTGATGACAACAGCTAGTAGCGAGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaattgactggttaatgtttgatctaatgttgagtgtgtattctatccatgcagACCAAAGGCAGTCAATTGTCTGAGGTGATGACAACAGCTAGTAGCGAGGCAATTGACCTCATCTCA
                      atctaat  putative branch site (score: 3)
                                         ttctatcc  putative PPT
            ttaatgttt  TA-rich tract