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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactagctagctcgtcatgacaccagtagcaagtgctcctagctagctacgtactaggctgatgcaacagttggtgtgtgtgcgtgcccgcgccattctgccagAGGCACTTCGACATGCCGTCGGGAGAGGACCCGGTCGTGCTGGACATGAGCACGATGGGCAAGGGCATGATGTTCGTCAACGGCCAGGGCATCGGCCGCT

Basic information

species Zea mays
transcript GRMZM2G175779_T02
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76920516|gb|DV168211.1|DV168211
EST:     GCGTCACCTGGAAGCCGGCCATGAACGACAGGCCGCTCACCTGGTACAAG                         AGGCACTTCGACATGCCGTCGGGAGAGGACCCGGTCGTGCTGGACATGAGC
genomic: GCGTCACCTGGAAGCCGGCCATGAACGACAGGCCGCTCACCTGGTACAAGgtaaactagc ... attctgccagAGGCACTTCGACATGCCGTCGGGAGAGGACCCGGTCGTGCTGGACATGAGC
EST: gi|8103092|gb|AW927754.1|AW927754
EST:     GCGTCACCTGGAAGCCGGCCGTGAACGACAGGCCGCTCACCTGGTACAAG                         AGGCACTTCGACATGCCGTCGGGAGAGGACCCGGTCGTGCTGGACATGAGC
genomic: GCGTCACCTGGAAGCCGGCCATGAACGACAGGCCGCTCACCTGGTACAAGgtaaactagc ... attctgccagAGGCACTTCGACATGCCGTCGGGAGAGGACCCGGTCGTGCTGGACATGAGC
EST: gi|78080986|gb|DV509398.1|DV509398
EST:     GCGTCACCTGGAAGCCGGCCATGAAAGACAGGCCGCTCACCTGGTACAAG                         AGGCACTTTC-ACATGCCGACGGGAGAGGACCCGGTCGTGCTGGACATGAG
genomic: GCGTCACCTGGAAGCCGGCCATGAACGACAGGCCGCTCACCTGGTACAAGgtaaactagc ... attctgccagAGGCACTT-CGACATGCCGTCGGGAGAGGACCCGGTCGTGCTGGACATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtactaggctgatgcaacagttggtgtgtgtgcgtgcccgcgccattctgccagAGGCACTTCGACATGCCGTCGGGAGAGGACCCGGTCGTGCTGGACATGAGCACGATGGGCAAGGGCATGATGTTCGTCAACGGCCAGGGCATCGGCCGCT
       ggctgat  putative branch site (score: 4)
                                           ccattct  putative PPT