1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...gattacttctattctttacttccataaaaaaaaggaaatctgaaggcttagcttacaacttattgccgaaccctgcacctcttacaactctccacaccagGTTCGTTGCCCTCGAGAAACACGCACGGCACATTCGAAGGACTGAGAGTTCAAGCTGTCGCATGGCTGACGTTCTTGATCACGGCCCTTTTCGCCACGCT
species | Zea mays |
transcript | GRMZM2G174990_T03 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGTGGATGATGGATGGGGTACTCCCAGAGGTAGTCTCCAAGCTTCTTCAG GTTCGTTGCCCTCGAGAAACACGCACGGCACATTCGAAGGACTGAGAGTTCEST: gi|211483118|gb|FK977845.1|FK977845
genomic: TGTGGATGATGGATGGGGTACTCCCAGAGGTAGTCTCCAAGCTTCTTCAGgtattctgtg ... tccacaccagGTTCGTTGCCCTCGAGAAACACGCACGGCACATTCGAAGGACTGAGAGTTC
EST: TGTGGATGATGGATGGGGTACTCCCAGAGGTAGTCTACAAGCTTCTTCAG GTTCGTTACCCTCGAGAAACACGCACGGCACATTCGAAGGACTGAGAACTGEST: gi|211480218|gb|FK977823.1|FK977823
genomic: TGTGGATGATGGATGGGGTACTCCCAGAGGTAGTCTCCAAGCTTCTTCAGgtattctgtg ... tccacaccagGTTCGTTGCCCTCGAGAAACACGCACGGCACATTCGAAGGACTGAGAGTTC
EST: TGTGGATGATGGATGGGGTACTCCCAGAGGTAGTCTCCAAGCTTCTTCAG GTTCGTTGCCCTCGAGAAACACGCACGGCACATTCGAAGGACTGAGAGEST: gi|211485991|gb|FK977851.1|FK977851
genomic: TGTGGATGATGGATGGGGTACTCCCAGAGGTAGTCTCCAAGCTTCTTCAGgtattctgtg ... tccacaccagGTTCGTTGCCCTCGAGAAACACGCACGGCACATTCGAAGGACTGAGAG
EST: GGATGAATGNATGGGGTACTCCCCAGAGGTAGTCTCCAAGCTTCTTTCAG GTTCGTTGCCCTCGAGAAACACGCACGGCACATTCGAEST: gi|211483107|gb|FK977834.1|FK977834
genomic: GGATGA-TGGATGGGGTACTCCC-AGAGGTAGTCTCCAAGCTTCTT-CAGgtattctgtg ... tccacaccagGTTCGTTGCCCTCGAGAAACACGCACGGCACATTCGA
EST: TGTGGATGATGGATGGGGTACTCCCAGAGGTAGTCTCCAAGCTTCTTCAG GTTCGTTGCCCTCGAGAAACACGCACGGCACATTCGAAGGACTGAGAGTTCEST: gi|211483117|gb|FK977844.1|FK977844
genomic: TGTGGATGATGGATGGGGTACTCCCAGAGGTAGTCTCCAAGCTTCTTCAGgtattctgtg ... tccacaccagGTTCGTTGCCCTCGAGAAACACGCACGGCACATTCGAAGGACTGAGAGTTC
EST: TGTGGATGATGGATGGGGTACTCCCAGAGGTAGTCTCCAAGCTTCTTCAG GTTCGTTGCCCTCGAGAAACACGCACGGCACATTCGAAGGACTGAGAGTTCEST: gi|211480227|gb|FK977832.1|FK977832
genomic: TGTGGATGATGGATGGGGTACTCCCAGAGGTAGTCTCCAAGCTTCTTCAGgtattctgtg ... tccacaccagGTTCGTTGCCCTCGAGAAACACGCACGGCACATTCGAAGGACTGAGAGTTC
EST: TGTGGATGATGGATGGGGTACTCCCAGAGGTAGTCTCCAAGCTTCTTCAG GTTCGTTGCCCTCGAGAAACACGCACGGCACATTCGAAGGACTGAGAGTTCEST: gi|71426246|gb|DR807296.1|DR807296
genomic: TGTGGATGATGGATGGGGTACTCCCAGAGGTAGTCTCCAAGCTTCTTCAGgtattctgtg ... tccacaccagGTTCGTTGCCCTCGAGAAACACGCACGGCACATTCGAAGGACTGAGAGTTC
EST: AGAGGTAGTCTCCAAGCTTCTTCAG GTTCGTTGCCCTCGAGAAACACGCACGGCACATTCGAAGGACTGAGAGTTC
genomic: AGAGGTAGTCTCCAAGCTTCTTCAGgtattctgtg ... tccacaccagGTTCGTTGCCCTCGAGAAACACGCACGGCACATTCGAAGGACTGAGAGTTC
gcttagcttacaacttattgccgaaccctgcacctcttacaactctccacaccagGTTCGTTGCCCTCGAGAAACACGCACGGCACATTCGAAGGACTGAGAGTTCAAGCTGTCGCATGGCTGACGTTCTTGATCACGGCCCTTTTCGCCACGCT
ctcttac putative branch site (score: 271)
ctctccac putative PPT
aacttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattacttctattctttacttccataaaaaaaaggaaatctgaaggcttagcttacaacttattgccgaaccctgcacctcttacaactctccacaccagGTTCGTTGCCCTCGAGAAACACGCACGGCACATTCGAAGGACTGAGAGTTCAAGCTGTCGCATGGCTGACGTTCTTGATCACGGCCCTTTTCGCCACGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - tgaaggc