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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctataattctcatctcagataagcttatagtactacctccattagtatatttgctatactatgcagctaaacttttagcctacattcatccagAATCAAACAAAATCCCAAGAATCAACAAGAGTAGACGTTGTCTACAACACAACACAGCGAG

Basic information

species Zea mays
transcript GRMZM2G174114_T01
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60350086|gb|DN217059.1|DN217059
EST:     GCTAACAGAAGCAGAGCTCCTACAACTACAATTGAGTCGCCAACAAAAAG                         AATCAAACAAAATCCCAAGAATCAACAAGAGTAGACGTTGTCTACAACACA
genomic: GCTAACAGAAGCAGAGCTCCTACAACTACAATTGAGTCGCCAACAAAAAGgtctataatt ... attcatccagAATCAAACAAAATCCCAAGAATCAACAAGAGTAGACGTTGTCTACAACACA
EST: gi|37389283|gb|CF631860.1|CF631860
EST:     GCTAACAGAAGCAGAGCTCCTACAACTACAATTGAGTCGCCAACAAAAAG                         AATCAAACAAAATCCCAAGAATCAACAAGAGTAGACGTTGTCTACAACACA
genomic: GCTAACAGAAGCAGAGCTCCTACAACTACAATTGAGTCGCCAACAAAAAGgtctataatt ... attcatccagAATCAAACAAAATCCCAAGAATCAACAAGAGTAGACGTTGTCTACAACACA
EST: gi|83278170|gb|DV942178.1|DV942178
EST:     GCTAACAGAAGCAGAGCTCCTACAACTACAATTGAGTCGCCAACAAAAAG                         AATCAAACAAAATCCCAAGAATCAACAAGAGTAGACGTTGTCTACAACACA
genomic: GCTAACAGAAGCAGAGCTCCTACAACTACAATTGAGTCGCCAACAAAAAGgtctataatt ... attcatccagAATCAAACAAAATCCCAAGAATCAACAAGAGTAGACGTTGTCTACAACACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccattagtatatttgctatactatgcagctaaacttttagcctacattcatccagAATCAAACAAAATCCCAAGAATCAACAAGAGTAGACGTTGTCTACAACACAACACAGCGAG
                          agctaaa  putative branch site (score: 3)
                                              ttcatcc  putative PPT
                             taaactttta  TA-rich tract