1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtactggctgaacctaacaccttcgtcaacacgagacagtacccgcgttgctatttcgatttcctaagtccattctctgttctttcccggtgcccactacacagTACGAAGACGAGGACCGTGATAAGGTCGTGCTTTCGTCGGACAGTGACCTTATAGCCGCTGTGGACCATGCGAGAAAGATCGGTTGGAAG
species | Zea mays |
transcript | GRMZM2G171622_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TTCAGAGGGTCGGCGACGACATTGACAGAAAACACCTGCCGCAAATTTTG TACGAAGACGAGGACCGTGATAAGGTCGTGCTTTCGTCGGACAGTGACCTTEST: gi|211358544|gb|FL182949.1|FL182949
genomic: TTCAGAGGGTCGGCGACGACATTGACAGAAAACACCTGCCGCAAATTTTGgtactggctg ... cactacacagTACGAAGACGAGGACCGTGATAAGGTCGTGCTTTCGTCGGACAGTGACCTT
EST: TTCAGAGGGTCGGCGACGACATTGACAGAAAACACCTCCCGCAAATTTTG TACGAAGACGAGGACCGTGATAAGGTCGTGCTTTCGTCGGACAGTGACCTTEST: gi|211361194|gb|FL182952.1|FL182952
genomic: TTCAGAGGGTCGGCGACGACATTGACAGAAAACACCTGCCGCAAATTTTGgtactggctg ... cactacacagTACGAAGACGAGGACCGTGATAAGGTCGTGCTTTCGTCGGACAGTGACCTT
EST: TTCAGAGGGTCGGCGACGACATTGACAGAAAACACCTCCCGCAAATTTTG TACGAAGACGAGGACCGTGATAAGGTCGTGCTTTCGTCGGACAGTGACCTT
genomic: TTCAGAGGGTCGGCGACGACATTGACAGAAAACACCTGCCGCAAATTTTGgtactggctg ... cactacacagTACGAAGACGAGGACCGTGATAAGGTCGTGCTTTCGTCGGACAGTGACCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactggctgaacctaacaccttcgtcaacacgagacagtacccgcgttgctatttcgatttcctaagtccattctctgttctttcccggtgcccactacacagTACGAAGACGAGGACCGTGATAAGGTCGTGCTTTCGTCGGACAGTGACCTTATAGCCGCTGTGGACCATGCGAGAAAGATCGGTTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG