Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttcttgttaatctaatttgtcgtttgaaaaatctgtttgggtttttttctagtacctgacatttgattttttttgttagatgcagACTCTTCTGTGAAAACTATGTCCAGGCCATCTGATTCCTCCTGGGATAAGATCGTTGCAACTCTGATGGCTTGTCTTATGGCTATTGTAATGTTGGTTCG

Basic information

species Zea mays
transcript GRMZM2G171354_T03
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|160481332|gb|EY254266.1|EY254266
EST:     TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAG                         ATGCAGACTCTTCTGTGAAAACTATGTCCAGGCCATCTGATTCCTCCTGGA
genomic: TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAGgtttgttctt ... ttagatgcagA--C----TCTTCTGTGAAAACTATGTCCAGGCCATCTGATTCCTCCTGGG
EST: gi|40337029|gb|CK371099.1|CK371099
EST:     TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAGATGCAG                    
genomic: TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCC---A---AGgtttgttctt ... ttaga
EST: gi|71447517|gb|DR828567.1|DR828567
EST:     TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAG                         ACTCTTCTGTGAAAACTATGTCCAGGCCATCTGATTCCTCCTGGGATAAGA
genomic: TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAGgtttgttctt ... ttagatgcagACTCTTCTGTGAAAACTATGTCCAGGCCATCTGATTCCTCCTGGGATAAGA
EST: gi|37397469|gb|CF636033.1|CF636033
EST:     TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAGATGCAG                    
genomic: TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCC---A---AGgtttgttctt ... ttaga
EST: gi|45568449|gb|CK986069.1|CK986069
EST:     TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAGATGCAG                    
genomic: TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCC---A---AGgtttgttctt ... ttaga


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctgtttgggtttttttctagtacctgacatttgattttttttgttagatgcagACTCTTCTGTGAAAACTATGTCCAGGCCATCTGATTCCTCCTGGGATAAGATCGTTGCAACTCTGATGGCTTGTCTTATGGCTATTGTAATGTTGGTTCG
                                    ttttttttgtt  CT-rich tract
                              atttgattttttttgt  TA-rich tract