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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttcttgttaatctaatttgtcgtttgaaaaatctgtttgggtttttttctagtacctgacatttgattttttttgttagATGCAGACTCTTCTGTGAAAACTATGTCCAGGCCATCTGATTCCTCCTGGGATAAGATCGTTGCAACTCTGATGGCTTGTCTTATGGCTATTGTAATGTT

Basic information

species Zea mays
transcript GRMZM2G171354_T01
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|160481332|gb|EY254266.1|EY254266
EST:     TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAG                         ATGCAGACTCTTCTGTGAAAACTATGTCCAGGCCATCTGATTCCTCCTGGA
genomic: TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAGgtttgttctt ... tttttgttagATGCAGACTCTTCTGTGAAAACTATGTCCAGGCCATCTGATTCCTCCTGGG
EST: gi|45568449|gb|CK986069.1|CK986069
EST:     TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAG                         ATGCAGACTCTTCTGTGAAAACTATGTCCAGGCCATCTGATTCCTCCTGGG
genomic: TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAGgtttgttctt ... tttttgttagATGCAGACTCTTCTGTGAAAACTATGTCCAGGCCATCTGATTCCTCCTGGG
EST: gi|40337029|gb|CK371099.1|CK371099
EST:     TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAG                         ATGCAGACTCTTCTGTGAAAACTATGTCCAGGCCATCTGATTCCTCCTGGG
genomic: TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAGgtttgttctt ... tttttgttagATGCAGACTCTTCTGTGAAAACTATGTCCAGGCCATCTGATTCCTCCTGGG
EST: gi|71447517|gb|DR828567.1|DR828567
EST:     TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAG                         A--C----TCTTCTGTGAAAACTATGTCCAGGCCATCTGATTCCTCCTGGG
genomic: TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAGgtttgttctt ... tttttgttagATGCAGACTCTTCTGTGAAAACTATGTCCAGGCCATCTGATTCCTCCTGGG
EST: gi|160481655|gb|EY254225.1|EY254225
EST:     TACATGTAGCAAGAGAGCAGCCACGAACGATACCATTCACGCCCCAAG                         ATCCAGACTCTTCTGTGAAAACTATGTCCAGGCCATCTGATTCCTCCTGGG
genomic: TACATGGAG-AAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAGgtttgttctt ... tttttgttagATGCAGACTCTTCTGTGAAAACTATGTCCAGGCCATCTGATTCCTCCTGGG
EST: gi|6194954|gb|AW147058.1|AW147058
EST:     TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAG                         ATGCAGACTCTTCTGTGAAAACTATGTCCAGGCCATCTGATTCCTCCTGGG
genomic: TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAGgtttgttctt ... tttttgttagATGCAGACTCTTCTGTGAAAACTATGTCCAGGCCATCTGATTCCTCCTGGG
EST: gi|37397469|gb|CF636033.1|CF636033
EST:     TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAG                         ATGCAGACTCTTCTGTGAAAACTATGTCCAGGCCATCTGATTCCTCCTGGG
genomic: TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAGgtttgttctt ... tttttgttagATGCAGACTCTTCTGTGAAAACTATGTCCAGGCCATCTGATTCCTCCTGGG
EST: gi|6695723|gb|AW288801.1|AW288801
EST:     TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAG                         ATGCAGACTCT
genomic: TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAGgtttgttctt ... tttttgttagATGCAGACTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaaaatctgtttgggtttttttctagtacctgacatttgattttttttgttagATGCAGACTCTTCTGTGAAAACTATGTCCAGGCCATCTGATTCCTCCTGGGATAAGATCGTTGCAACTCTGATGGCTTGTCTTATGGCTATTGTAATGTT
                                          ttttttttgtt  CT-rich tract
                                    atttgattttttttgt  TA-rich tract