1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...gccctactccctgcctaacaaaaactcataatcatctagtctgaactgtgatggatatcccatgcgtaattttgttatactgaattccttaagtttgcagGACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTGACTATCGGCATGGTACAGGCCATGGAATTGGATCTTATTTGAATGTCCA
species | Zea mays |
transcript | GRMZM2G169095_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAG GACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTGEST: gi|211089695|gb|FL030414.1|FL030414
genomic: GAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAGgtgagtttgt ... aagtttgcagGACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
EST: GAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAG GACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTGEST: gi|211089690|gb|FL030409.1|FL030409
genomic: GAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAGgtgagtttgt ... aagtttgcagGACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
EST: GAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAG GACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTGEST: gi|71439289|gb|DR820339.1|DR820339
genomic: GAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAGgtgagtttgt ... aagtttgcagGACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
EST: GAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAG GACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTGEST: gi|67010801|gb|CO439550.1|CO439550
genomic: GAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAGgtgagtttgt ... aagtttgcagGACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
EST: GCTGTGTTTCTCT-ATGGGACGACAG GACATGCTCTTGCTATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTGEST: gi|13382055|gb|BG458730.1|BG458730
genomic: GCTGTGTTTC-CTAATGGGACGACAGgtgagtttgt ... aagtttgcagGACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
EST: CCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAG GACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTGEST: gi|211089692|gb|FL030411.1|FL030411
genomic: CCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAGgtgagtttgt ... aagtttgcagGACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
EST: GAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAG GACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTGEST: gi|211089696|gb|FL030415.1|FL030415
genomic: GAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAGgtgagtttgt ... aagtttgcagGACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
EST: TTCCTAATGGGACGACAG GACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTGEST: gi|67018778|gb|CO447527.1|CO447527
genomic: TTCCTAATGGGACGACAGgtgagtttgt ... aagtttgcagGACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
EST: GAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAG GACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTGEST: gi|211089691|gb|FL030410.1|FL030410
genomic: GAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAGgtgagtttgt ... aagtttgcagGACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
EST: GAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAG GACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTGEST: gi|211089694|gb|FL030413.1|FL030413
genomic: GAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAGgtgagtttgt ... aagtttgcagGACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
EST: TTCCTAATGGGACGACAG GACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTGEST: gi|32937410|gb|CF042229.1|CF042229
genomic: TTCCTAATGGGACGACAGgtgagtttgt ... aagtttgcagGACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
EST: GAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAG GACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTGEST: gi|211092150|gb|FL030416.1|FL030416
genomic: GAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAGgtgagtttgt ... aagtttgcagGACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
EST: GAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAG GACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
genomic: GAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAGgtgagtttgt ... aagtttgcagGACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
ctgtgatggatatcccatgcgtaattttgttatactgaattccttaagtttgcagGACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTGACTATCGGCATGGTACAGGCCATGGAATTGGATCTTATTTGAATGTCCA
ttcctta CT-rich tract
taattttgttatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccctactccctgcctaacaaaaactcataatcatctagtctgaactgtgatggatatcccatgcgtaattttgttatactgaattccttaagtttgcagGACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTGACTATCGGCATGGTACAGGCCATGGAATTGGATCTTATTTGAATGTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - -tccctgc
- - - - - - - - aacaaaa
- - - - - - - - - - - - - - - - - - - - - - - tgtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgtt