1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gagttagagctaaaggaatccaaactttacatatgcacgttaaagttcacatcaccctgaaaacgttatctgtagacgtttgacatggaatatggctcagGTTGTTGAACGGGTGCTTGGCTGGATAATGAAGCTCTTCCCAGGAGGGCCAAAGCGGCGAACCAGCAAACTTCTGTAATGAAAATAGAGCTCCTAGTATA
species | Zea mays |
transcript | GRMZM2G166873_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ACACACGCTCCATCAATTATGCAACAATGTATGCAGATGAAGGAGATGAG GTTGTTGAACGGGTGCTTGGCTGGATAATGAAGCTCTTCCCAGGAGGGCCAEST: gi|110526202|gb|EE030386.1|EE030386
genomic: ACACACGCTCCATCAATGATGCAACAATGTATGCAGATGAAGGAGATGAGgtaagtatcc ... tatggctcagGTTGTTGAACGGGTGCTTGGCTGGATAATGAAGCTCTTCCCAGGAGGGCCA
EST: ACACACGCTCCATCAATGATGCAACAATGTATGCAGATGAAGGAGATGAG GTTGTTGAACGGGTGCTTGGCTGGATAATGAAGCTCTTCCCAGGAGGGCCA
genomic: ACACACGCTCCATCAATGATGCAACAATGTATGCAGATGAAGGAGATGAGgtaagtatcc ... tatggctcagGTTGTTGAACGGGTGCTTGGCTGGATAATGAAGCTCTTCCCAGGAGGGCCA
ttcacatcaccctgaaaacgttatctgtagacgtttgacatggaatatggctcagGTTGTTGAACGGGTGCTTGGCTGGATAATGAAGCTCTTCCCAGGAGGGCCAAAGCGGCGAACCAGCAAACTTCTGTAATGAAAATAGAGCTCCTAGTATA
gtttgac putative branch site (score: 18)
aatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagttagagctaaaggaatccaaactttacatatgcacgttaaagttcacatcaccctgaaaacgttatctgtagacgtttgacatggaatatggctcagGTTGTTGAACGGGTGCTTGGCTGGATAATGAAGCTCTTCCCAGGAGGGCCAAAGCGGCGAACCAGCAAACTTCTGTAATGAAAATAGAGCTCCTAGTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - atgcacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catggaa