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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcctcaagctattccgcccacatgttaccaacattttcgaagaaggcggtacatctgtatttttcatggtattggggaatatcatcagtgcttactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCTGACGTCGACGTAAGGTACTATGCAAACCAGGCACTGCAGGCGTGCGACC

Basic information

species Zea mays
transcript GRMZM2G164352_T04
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37385657|gb|CF629982.1|CF629982
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|6194677|gb|AW146781.1|AW146781
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAG
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAG
EST: gi|18169181|gb|BM339021.1|BM339021
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGGAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|67016540|gb|CO445289.1|CO445289
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|4647623|gb|AI622698.1|AI622698
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|4886133|gb|AI677253.1|AI677253
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|31362531|gb|CD446888.1|CD446888
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|37400099|gb|CF637395.1|CF637395
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGTTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|67017790|gb|CO446539.1|CO446539
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|211445242|gb|FL029827.1|FL029827
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|37401589|gb|CF638162.1|CF638162
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|31360934|gb|CD445291.1|CD445291
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|4966839|gb|AI691695.1|AI691695
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|37382657|gb|CF628287.1|CF628287
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|149075393|gb|EE163907.2|EE163907
EST:     TCAATGTTGGGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATTT                         GTGGTGGGGAAGACCGTGAAACCGTGCCTCGTTGAGTTCAGGGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|32799365|gb|CD951601.1|CD951601
EST:     GATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: GATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|28931026|gb|CB334387.1|CB334387
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|21391215|gb|BQ529264.1|BQ529264
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|60346737|gb|DN213710.1|DN213710
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|211384211|gb|FL475814.1|FL475814
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|12970893|gb|BG267211.1|BG267211
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|211206779|gb|FL154155.1|FL154155
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|60348170|gb|DN215143.1|DN215143
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|24764008|gb|CA399177.1|CA399177
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|78025689|gb|DV494076.1|DV494076
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|60400129|gb|DN232936.1|DN232936
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|32907549|gb|CF012362.1|CF012362
EST:     TCAATGTCGCGAAAGTACTGCAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|60344803|gb|DN211776.1|DN211776
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|149000780|gb|EE038003.2|EE038003
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|40303778|gb|CK348165.1|CK348165
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|6989629|gb|AW447842.1|AW447842
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGNTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|67022121|gb|CO450870.1|CO450870
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|15590039|gb|BI674655.1|BI674655
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|60400542|gb|DN233349.1|DN233349
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|33095990|gb|CF055984.1|CF055984
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|29130087|gb|CB380791.1|CB380791
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|32796658|gb|CD948894.1|CD948894
EST:     GATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGA-CCT
genomic: GATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|8930129|gb|BE224773.1|BE224773
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|60346645|gb|DN213618.1|DN213618
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|67039515|gb|CO465770.1|CO465770
EST:     AATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGNNAC-A-TCT                         GTG-TGGAGA-GACCGTGAAAC-GTGCCTCGTTGAGCTCA
genomic: AATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCG--ACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCA
EST: gi|24767244|gb|CA402388.1|CA402388
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|20513030|gb|BQ280216.1|BQ280216
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|24769523|gb|CA404652.1|CA404652
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|67033917|gb|CO462666.1|CO462666
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
EST: gi|18659705|gb|BM500480.1|BM500480
EST:     TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCT                         GTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT
genomic: TCAATGTTGCGAAAGTACTACAGTCACTTGTACCGATCCTCGACCAATCTgtgagttcct ... tactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtacatctgtatttttcatggtattggggaatatcatcagtgcttactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCTGACGTCGACGTAAGGTACTATGCAAACCAGGCACTGCAGGCGTGCGACC
                                         tgcttac  putative branch site (score: 2)
                                           cttactcc  CT-rich tract
          tatttttcat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagttcctcaagctattccgcccacatgttaccaacattttcgaagaaggcggtacatctgtatttttcatggtattggggaatatcatcagtgcttactccgcagGTGGTGGAGAAGACCGTGAAACCGTGCCTCGTTGAGCTCAGCGAGGACCCTGACGTCGACGTAAGGTACTATGCAAACCAGGCACTGCAGGCGTGCGACC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG