1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaatgctacttttcaaagaagaatgttggaagcaaaactatttgacctttaagcatgttcttgttccttcatgtaaattgatttccgtacaccaaattatttgagtagcatacatgagctgatgagtttgctgctcaaatgttgtagcgtggaactaataatatctgtcttattttctttttcttgtgaacagGAGGCAGCTCCAGAATCCCACTAGAGCTACCAGATCCCTAAGTTCTCTGACAAGGGCAGTTAGACGAG
species | Zea mays |
transcript | GRMZM2G164185_T02 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ACTGGTAACAGTGAGGCGACAACACTTGAAGCAACCCGAAACCCTACAAG GAGGCAGCTCCAGAATCCCACTAGAGCTACCAGATCTTTTAGTTCTCTGACEST: gi|91057148|gb|EB167566.1|EB167566
genomic: ACTGGTAACAGTGAGGCGACAACACTTGAAGCAACCCGAAACCCTACAAGgtaatgctac ... ttgtgaacagGAGGCAGCTCCAGAATCCCACTAGAGCTACCAGATCCCTAAGTTCTCTGAC
EST: ACTGGTAACAGTGAGGCGACAACACTTGAAGCAACCCGAAACCCTACAAG GAGGCAGCTCCAGAATCCCACTAGAGCTACCAGATCCCTAAGTTCTCTGACEST: gi|67032341|gb|CO461090.1|CO461090
genomic: ACTGGTAACAGTGAGGCGACAACACTTGAAGCAACCCGAAACCCTACAAGgtaatgctac ... ttgtgaacagGAGGCAGCTCCAGAATCCCACTAGAGCTACCAGATCCCTAAGTTCTCTGAC
EST: TGGTAACAGTGAGGCGACAACACTTGAAAGCA-CCCGAAACCCNTACANG GAG-CAGCTCCAGAATCCCACTAGAGCTACCAGATCCCTA-GTTCTCTGAEST: gi|71425474|gb|DR806698.1|DR806698
genomic: TGGTAACAGTGAGGCGACAACACTTGAA-GCAACCCGAAACCC-TACAAGgtaatgctac ... ttgtgaacagGAGGCAGCTCCAGAATCCCACTAGAGCTACCAGATCCCTAAGTTCTCTGA
EST: ACTGGTAACAGTGAGGCGACAACACTTGAAGCAACCCGAAACCCTACAAG GAGGCAGCTCCAGAATCCCACTAGAGCTACCAGATCCCTAAGTTCTCTGAC
genomic: ACTGGTAACAGTGAGGCGACAACACTTGAAGCAACCCGAAACCCTACAAGgtaatgctac ... ttgtgaacagGAGGCAGCTCCAGAATCCCACTAGAGCTACCAGATCCCTAAGTTCTCTGAC
atgttgtagcgtggaactaataatatctgtcttattttctttttcttgtgaacagGAGGCAGCTCCAGAATCCCACTAGAGCTACCAGATCCCTAAGTTCTCTGACAAGGGCAGTTAGACGAG
aactaat putative branch site (score: 2)
tatctgtcttattttc putative PPT
taataatatctgtctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgctacttttcaaagaagaatgttggaagcaaaactatttgacctttaagcatgttcttgttccttcatgtaaattgatttccgtacaccaaattatttgagtagcatacatgagctgatgagtttgctgctcaaatgttgtagcgtggaactaataatatctgtcttattttctttttcttgtgaacagGAGGCAGCTCCAGAATCCCACTAGAGCTACCAGATCCCTAAGTTCTCTGACAAGGGCAGTTAGACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT