1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tacttttttttaatcaatgttgtcttgtctggtattcttgtgtttgtttggcttgtcgtatagctgaactctaaggctctcttgactcgaacacatgcagTGCAAAAATGTGATAAGCAAGCTTTGGAGGAGGATTGACAAAGAAGGTCATCAAATGATACCTAACATATCTTCTTGGTGGCGGAGGAATGAGAATTCGT
species | Zea mays |
transcript | GRMZM2G163849_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CTGCCCCTGAGTTCGGTGGCACAAAGATGTCTGACAGTATGCAAAGAAAG TGCAAAAATGTGATAAGCAAGCTTTGGAGGAGGATTGACAAAGAAGGTCATEST: gi|26559439|gb|CA831674.1|CA831674
genomic: CTGCCCCTGAGTTCGGTGGCACAAAGATGTCTGACAGTATGCAAAGAAAGgtaggcacac ... acacatgcagTGCAAAAATGTGATAAGCAAGCTTTGGAGGAGGATTGACAAAGAAGGTCAT
EST: CTGCCCCTGAGTTCGGTGGCACAAAGATGTCTGACAGTATGCAAAGAAAG TGCAAAAATGTGATAAGCAAGCTTTGGAGGAGGATTGACAAAGAAGGTCATEST: gi|149103420|gb|EE288811.2|EE288811
genomic: CTGCCCCTGAGTTCGGTGGCACAAAGATGTCTGACAGTATGCAAAGAAAGgtaggcacac ... acacatgcagTGCAAAAATGTGATAAGCAAGCTTTGGAGGAGGATTGACAAAGAAGGTCAT
EST: CTGCCCCTGAGTTCGGTGGCACAAAGATGTCTGACAGTATGCAAAGAAAG TGCAAAAATGTGATAAGCAAGCTTTGGAGGAGGATTGACAAAGAAGGTCATEST: gi|87157814|gb|DY402603.1|DY402603
genomic: CTGCCCCTGAGTTCGGTGGCACAAAGATGTCTGACAGTATGCAAAGAAAGgtaggcacac ... acacatgcagTGCAAAAATGTGATAAGCAAGCTTTGGAGGAGGATTGACAAAGAAGGTCAT
EST: CTGCCCCTGAGTTCGGTGGCACAAAGATGTCTGACAGTATGCAAAGAAAG TGCAAAAATGTGATAAGCAAGCTTTGGAGGAGGATTGACAAAGAAGGTCATEST: gi|22545532|gb|BU097891.1|BU097891
genomic: CTGCCCCTGAGTTCGGTGGCACAAAGATGTCTGACAGTATGCAAAGAAAGgtaggcacac ... acacatgcagTGCAAAAATGTGATAAGCAAGCTTTGGAGGAGGATTGACAAAGAAGGTCAT
EST: CTGCCCCTGAGTTCGGTGGCACAAAGATGTCTGACAGTATGCAAAGAAAG TGCAAAAATGTGATAAGCAAGCTTTGGAGGAGGATTGACAAAGAAGGTCAT
genomic: CTGCCCCTGAGTTCGGTGGCACAAAGATGTCTGACAGTATGCAAAGAAAGgtaggcacac ... acacatgcagTGCAAAAATGTGATAAGCAAGCTTTGGAGGAGGATTGACAAAGAAGGTCAT
gtttggcttgtcgtatagctgaactctaaggctctcttgactcgaacacatgcagTGCAAAAATGTGATAAGCAAGCTTTGGAGGAGGATTGACAAAGAAGGTCATCAAATGATACCTAACATATCTTCTTGGTGGCGGAGGAATGAGAATTCGT
tcttgac putative branch site (score: 107)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacttttttttaatcaatgttgtcttgtctggtattcttgtgtttgtttggcttgtcgtatagctgaactctaaggctctcttgactcgaacacatgcagTGCAAAAATGTGATAAGCAAGCTTTGGAGGAGGATTGACAAAGAAGGTCATCAAATGATACCTAACATATCTTCTTGGTGGCGGAGGAATGAGAATTCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - atgttgt
- - - - - - - - - - - - -tgtctgg
- - - - - - - - - - - - - - - - -attcttg
- - - - - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgaac