1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgatctgcccaatgatttggacgacttatgttatggttctgctagatgtcatttgatttgcctcattaggtaaacataaaaattgttttatgtgtggtgtgtaacttcttgttttcatgcgttgatcagAGAATGAAAAGGTTGAAGGCGAGGAACTTGAAGAGTGGCTAAAGTCAGTTGTTGCATCAAAAGAGTTGACCTCTTTTATCAGAGGACAGCAAGAGCAAGT
species | Zea mays |
transcript | GRMZM2G163193_T02 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TATTCGTGCTAATCCTGCAGTTTTGGAAGGCCTCGGAGCATATTTAGAAG AGAATGAAAAGGTTGAAGGCGAGGAACTTGAAGAGTGGCTAAAGTCAGTTGEST: gi|78121515|gb|DV539899.1|DV539899
genomic: TATTCGTGCTAATCCTGCAGTTTTGGAAGGCCTCGGAGCATATTTAGAAGgtgatctgcc ... cgttgatcagAGAATGAAAAGGTTGAAGGCGAGGAACTTGAAGAGTGGCTAAAGTCAGTTG
EST: TATTCGTGCTAATCCTGCAGTTTTGGAAGGCCTCGGAGCATATTTAGAAG AGAATGAAAAGGTTGAAGGCGAGGAACTTGAAGAGTGGCTAAAGTCAGTTGEST: gi|71449715|gb|DR830765.1|DR830765
genomic: TATTCGTGCTAATCCTGCAGTTTTGGAAGGCCTCGGAGCATATTTAGAAGgtgatctgcc ... cgttgatcagAGAATGAAAAGGTTGAAGGCGAGGAACTTGAAGAGTGGCTAAAGTCAGTTG
EST: TATTCGTGCTAATCCTGCAGTTTTGGAAGGCCTCGGAGCATATTTAGAAG AGAATGAAAAGGTTGAAGGCGAGGAACTTGAAGAGTGGCTAAAGTCAGTTGEST: gi|67033989|gb|CO462738.1|CO462738
genomic: TATTCGTGCTAATCCTGCAGTTTTGGAAGGCCTCGGAGCATATTTAGAAGgtgatctgcc ... cgttgatcagAGAATGAAAAGGTTGAAGGCGAGGAACTTGAAGAGTGGCTAAAGTCAGTTG
EST: TATTCGTGCTAATCCTGCAGTTTTGGAAGGCCTCGGAGCATATTTAGAAG AGAATGAAAAGGTTGAAGGCGAGGAACTTGAAGAGTGGCTAAAGTCAGTTGEST: gi|13562289|gb|BG550509.1|BG550509
genomic: TATTCGTGCTAATCCTGCAGTTTTGGAAGGCCTCGGAGCATATTTAGAAGgtgatctgcc ... cgttgatcagAGAATGAAAAGGTTGAAGGCGAGGAACTTGAAGAGTGGCTAAAGTCAGTTG
EST: TATTCGTGCTAATCCTGCAGTTTTGGAAGGCCTCGGAGCATATTTAGAAG AGAATGAAAAGGTTGAAGGCGAGGAACTTGATTATTGTTCTAAAGTCAGTTEST: gi|71329683|gb|DR801566.1|DR801566
genomic: TATTCGTGCTAATCCTGCAGTTTTGGAAGGCCTCGGAGCATATTTAGAAGgtgatctgcc ... cgttgatcagAGAATGAAAAGGTTGAAGGCGAGGAACTTGAAGAGTG-GCTAAAGTCAGTT
EST: TATTCGTGCTAATCCTGCAGTTTTGGAAGGCCTCGGAGCATATTTAGAAG AGAATGAAAAGGTTGAAGGCGAGGAACTCGAAGAGTGGCTAAAGTCAGTTGEST: gi|13558170|gb|BG549526.1|BG549526
genomic: TATTCGTGCTAATCCTGCAGTTTTGGAAGGCCTCGGAGCATATTTAGAAGgtgatctgcc ... cgttgatcagAGAATGAAAAGGTTGAAGGCGAGGAACTTGAAGAGTGGCTAAAGTCAGTTG
EST: TATTCGTGCTAATCCTGCAGTTTTGGAAGGCCTCGGAGCATATTTAGAAG AGAATGAAAAGGTTGAAGGCGTGGTTTTTTGTAGAGTGGCTAAAGTCAGTTEST: gi|211228739|gb|FL103757.1|FL103757
genomic: TATTCGTGCTAATCCTGCAGTTTTGGAAGGCCTCGGAGCATATTTAGAAGgtgatctgcc ... cgttgatcagAGAATGAAAAGGTTGAAGGCGAGG-AACTTGAAGAGTGGCTAAAGTCAGTT
EST: TATTCGTGCTAATCCTGCAGTTTTGGAAGGCCTCGGAGCATATTTAGAAG AGAATGAAAAGGTTGAAGGCGAGGAACTTGAAGAGTGGCTAAAGTCAGTTGEST: gi|13558169|gb|BG549525.1|BG549525
genomic: TATTCGTGCTAATCCTGCAGTTTTGGAAGGCCTCGGAGCATATTTAGAAGgtgatctgcc ... cgttgatcagAGAATGAAAAGGTTGAAGGCGAGGAACTTGAAGAGTGGCTAAAGTCAGTTG
EST: TATTCGTGCTAATCCTGCAGTTTTGGAAGGCCTCGGAGCATATTTAGAAG AGAATGAAAAGGTTGAAGGCGAGGAACTTGAAGAGTGGCTAAAGTCAGTTGEST: gi|101384111|gb|EB814110.1|EB814110
genomic: TATTCGTGCTAATCCTGCAGTTTTGGAAGGCCTCGGAGCATATTTAGAAGgtgatctgcc ... cgttgatcagAGAATGAAAAGGTTGAAGGCGAGGAACTTGAAGAGTGGCTAAAGTCAGTTG
EST: TATTCGTGCTAATCCTGCAGTTTTGGAAGGCCTCGGAGCATATTTAGAAG AGAATGAAAAGGTTGAAGGCGAGGAACTTGAAGAGTGGCTAAAGTCAGTTG
genomic: TATTCGTGCTAATCCTGCAGTTTTGGAAGGCCTCGGAGCATATTTAGAAGgtgatctgcc ... cgttgatcagAGAATGAAAAGGTTGAAGGCGAGGAACTTGAAGAGTGGCTAAAGTCAGTTG
cataaaaattgttttatgtgtggtgtgtaacttcttgttttcatgcgttgatcagAGAATGAAAAGGTTGAAGGCGAGGAACTTGAAGAGTGGCTAAAGTCAGTTGTTGCATCAAAAGAGTTGACCTCTTTTATCAGAGGACAGCAAGAGCAAGT
gtgtaac putative branch site (score: 171)
aaattgttttatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatctgcccaatgatttggacgacttatgttatggttctgctagatgtcatttgatttgcctcattaggtaaacataaaaattgttttatgtgtggtgtgtaacttcttgttttcatgcgttgatcagAGAATGAAAAGGTTGAAGGCGAGGAACTTGAAGAGTGGCTAAAGTCAGTTGTTGCATCAAAAGAGTTGACCTCTTTTATCAGAGGACAGCAAGAGCAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG