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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactgtcgcttccctgtgaaataactagcctgcatgctttctctgtaactattgacttaacactgtcttcaaatgacagATTTCTACCTCTGGCATGACTCTATGCCTTCTTGCCGTTTCTGTTGTATTTTTTCTCAAG

Basic information

species Zea mays
transcript GRMZM2G160504_T02
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G160504_T02 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os05g49260.1 (Oryza sativa), 3'ss of exon 12
gtaactgtcgcttccctgtgaaataactagcctgcatgctttctctgtaactattgacttaacactgtcttcaaatgacagATTTCTACCTCTGGCATGACTCTATGCCTTCTTGCCGTTTCTGTTGTATTTTTTCTCAAG
|||| |  | ||||||  |||||| ||     ||   |  || |||||||| ||    |    |||  ||| ||||  ||||| |||||  |||| ||||||||| |||||||||| || |||||||||||||||||  ||
gtaatttcctcttcccaatgaaatcacctttttgttag--ttgtctgtaacaataacatagtgactcacttaaaattgcagATCTCTACTGCTGGGATGACTCTAAGCCTTCTTGCAGTATCTGTTGTATTTTTTCTGGAG

upper sequence: GRMZM2G160504_T02 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os05g49270.1 (Oryza sativa), 3'ss of exon 12
gtaactgtcgcttccctgtgaa-ataactagcctgcatgct-ttctctgtaactattgacttaacactgtcttcaaatgacagATTTCTACCTCTGGCATGACTCTATGCCTTCTTGCCGTTTCTGTTGTATTTTTTCTCAAG
|||| | ||     ||||  |  | | |  ||     | || |  ||||| || ||  |   | | ||  |||||| |   |||| ||| |  |||| ||||||||| |||| ||||| ||| ||||||||||||| ||||||
gtaattctcttcctcctgaaactaaagcatgctaattttctgtattctgtgaccat-aataaagctctcgcttcaacttctagATCTCTTCTGCTGGGATGACTCTAAGCCTCCTTGCAGTTGCTGTTGTATTTTTCCTCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctagcctgcatgctttctctgtaactattgacttaacactgtcttcaaatgacagATTTCTACCTCTGGCATGACTCTATGCCTTCTTGCCGTTTCTGTTGTATTTTTTCTCAAG
                                      ctgtcttc  CT-rich tract
                     taactatt  TA-rich tract