1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...gtaaactaaactgtccattattcagctccagtaacttctggtttcatgatgaaattattaaacactgacccatggccttacgtttgtctcgtattgacagAATGGAAAGACAGCGTCGGGAGGATGAATTGAGAAATCGATCTTCTAAGAAAACACAAGAAGCTGAACAGCCAACATCTAAGAGG
species | Zea mays |
transcript | GRMZM2G157462_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GAACGTGCTTTTGTTCCTCCCCAACATTTCATCCGCTTAGTACAAAGAAG AATGGAAAGACAGCGTCCGGGAGGATGAATTGAGAAATCGATCTTCTAAGAEST: gi|9254689|gb|BE345157.1|BE345157
genomic: GAACGTGCTTTTGTTCCTCCCCAACATTTCATCCGCTTAGTACAAAGAAGgtcagtcatc ... gtattgacagAATGGAAAGACAGCGTC-GGGAGGATGAATTGAGAAATCGATCTTCTAAGA
EST: GAACGTGCTTTTGTTCCTCCCCAACATTTCATCCGCTTAGTACAAAGAAG AATGGAAAGACAGCGTCGGGAGGATGAATTGAGAAATCGATCTTCTAAGAAEST: gi|211286763|gb|FK982429.1|FK982429
genomic: GAACGTGCTTTTGTTCCTCCCCAACATTTCATCCGCTTAGTACAAAGAAGgtcagtcatc ... gtattgacagAATGGAAAGACAGCGTCGGGAGGATGAATTGAGAAATCGATCTTCTAAGAA
EST: GAACGTGCTTTTGTTCCTCCCCAACATTTCATCCGCTTAGTACAAAGAAG AATGGAAAGACAGCGTCGGGAGGATGAATTGAGAAATCGATCTTCTAAGAAEST: gi|31353959|gb|CD438316.1|CD438316
genomic: GAACGTGCTTTTGTTCCTCCCCAACATTTCATCCGCTTAGTACAAAGAAGgtcagtcatc ... gtattgacagAATGGAAAGACAGCGTCGGGAGGATGAATTGAGAAATCGATCTTCTAAGAA
EST: GAACGTGCTTTTGTTCCTCCCCAACATTTCATCCGCTTAGTACAAAGAAG AATGGAAAGACAGCGTCGGGAGGATGAATTGAGAAATCGATCTTCTAAGAAEST: gi|211132359|gb|FK982426.1|FK982426
genomic: GAACGTGCTTTTGTTCCTCCCCAACATTTCATCCGCTTAGTACAAAGAAGgtcagtcatc ... gtattgacagAATGGAAAGACAGCGTCGGGAGGATGAATTGAGAAATCGATCTTCTAAGAA
EST: GAACGTGCTTTTGTTCCTCCCCAACATTTCATCCGCTTAGTACAAAGAAG AATGGAAAGACAGCGTCGGGAGGATGAATTGAGAAATCGATCTTCTAAGAAEST: gi|31354322|gb|CD438679.1|CD438679
genomic: GAACGTGCTTTTGTTCCTCCCCAACATTTCATCCGCTTAGTACAAAGAAGgtcagtcatc ... gtattgacagAATGGAAAGACAGCGTCGGGAGGATGAATTGAGAAATCGATCTTCTAAGAA
EST: GAACGTGCTTTTGTTCCTCCCCAACATTTCATCCGCTTAGTACAAAGAAG AATGGAAAGACAGCGTCGGGAGGATGAATTGAGAAATCGATCTTCTAAGAA
genomic: GAACGTGCTTTTGTTCCTCCCCAACATTTCATCCGCTTAGTACAAAGAAGgtcagtcatc ... gtattgacagAATGGAAAGACAGCGTCGGGAGGATGAATTGAGAAATCGATCTTCTAAGAA
atgatgaaattattaaacactgacccatggccttacgtttgtctcgtattgacagAATGGAAAGACAGCGTCGGGAGGATGAATTGAGAAATCGATCTTCTAAGAAAACACAAGAAGCTGAACAGCCAACATCTAAGAGG
aaattattaaacact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaactaaactgtccattattcagctccagtaacttctggtttcatgatgaaattattaaacactgacccatggccttacgtttgtctcgtattgacagAATGGAAAGACAGCGTCGGGAGGATGAATTGAGAAATCGATCTTCTAAGAAAACACAAGAAGCTGAACAGCCAACATCTAAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- aaactaa
- - - - - - - - - - - - gctccag
- - - - - - - - - - - - - - - - - cttctgg
- - - - - - - - - - - - - - - - - - - - - - - tgatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatggc