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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtggcattagttctttgcattcacttgacattctatgcaacacactgttacacatgatagaaatgctctttgatggttctaattgacattttttggaatttaacggcagGCAATTGAGGCCCGGGACAGAGATTATATCTGTACAGAGTACTGGCGATCAAGGCCCCATGCAACAATTGAGAATCGAGACAATCAGAATATGTCACCTC

Basic information

species Zea mays
transcript GRMZM2G156910_T01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G156910_T02 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os05g10770.1 (Oryza sativa), 3'ss of exon 11
gtgtggcattagttctttgcattcacttgacattctatgcaacacactgttacacatgatagaaatgctc-tttgatggttctaattgacattttttggaatttaacggcagGCAATTGAGGCCCGGGACAGAGATTATATCTGTACAGAGTACTGGCGATCAAGGCCCCATGCAACAATTGAGAATCGAGACAATCAGAATATGTCACCTC
      |||  | |       || | |   |||    |  |  || ||||  |    |   |  | | |  |||| |||  | |||         | | || ||||   |||||||||  ||| |||||||||||| | |||||||||||||||||| |||||||||||||||     |||||| ||| | |||||| | |||||| | |||
------cat--gctaagcttgttaattaagcatgtagttgattac-ctgtagctttggtctgtcaagttgatttgttggagccaatctttgacact-gcaacttaa--acagGCAATTTGGGCGCGGGACAGAGATCACATCTGTACAGAGTACTGGAGATCAAGGCCCCATGTTCTCATTGAGGATCCAAACAATCGGCATATGTTATCTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatagaaatgctctttgatggttctaattgacattttttggaatttaacggcagGCAATTGAGGCCCGGGACAGAGATTATATCTGTACAGAGTACTGGCGATCAAGGCCCCATGCAACAATTGAGAATCGAGACAATCAGAATATGTCACCTC
                                 attttttggaatttaa  TA-rich tract