1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtttatttttgaaaattatttcaccatatttgtactctggcctccagactgtggcacaatactcaagatttacttttctgatattaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAAGAAATGGTTACCGAAATTATGTTTGATCTGAGAGCTAGTGGCCAAAGTT
species | Zea mays |
transcript | GRMZM2G153704_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG CAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAAEST: gi|32832104|gb|CD971782.1|CD971782
genomic: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttattttt ... ttaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
EST: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG CAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAAEST: gi|61119088|gb|DN560049.1|DN560049
genomic: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttattttt ... ttaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
EST: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG CAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAAEST: gi|67035008|gb|CO463541.1|CO463541
genomic: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttattttt ... ttaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
EST: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG CAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAAEST: gi|60339583|gb|DN206556.1|DN206556
genomic: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttattttt ... ttaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
EST: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG CAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAAEST: gi|67037358|gb|CO464198.1|CO464198
genomic: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttattttt ... ttaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
EST: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG CAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAAEST: gi|32933856|gb|CF038668.1|CF038668
genomic: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttattttt ... ttaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
EST: TGGCTGTAGGAATGGCCTCTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG CAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAAEST: gi|7844519|gb|AW787741.1|AW787741
genomic: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttattttt ... ttaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
EST: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG CANGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAAEST: gi|211050167|gb|FL124868.1|FL124868
genomic: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttattttt ... ttaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
EST: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG CAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAAEST: gi|78179345|gb|DV549718.1|DV549718
genomic: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttattttt ... ttaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
EST: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG CAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAAEST: gi|7844129|gb|AW787332.1|AW787332
genomic: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttattttt ... ttaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
EST: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG C-AGG-AAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAAEST: gi|32847646|gb|CD987327.1|CD987327
genomic: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttattttt ... ttaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
EST: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG CAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAAEST: gi|32835079|gb|CD974757.1|CD974757
genomic: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttattttt ... ttaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
EST: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG CAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAAEST: gi|22545719|gb|BU098078.1|BU098078
genomic: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttattttt ... ttaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
EST: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG CAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
genomic: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttattttt ... ttaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
ggcctccagactgtggcacaatactcaagatttacttttctgatattaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAAGAAATGGTTACCGAAATTATGTTTGATCTGAGAGCTAGTGGCCAAAGTT
tattaac putative branch site (score: 1)
ttttctgatattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttatttttgaaaattatttcaccatatttgtactctggcctccagactgtggcacaatactcaagatttacttttctgatattaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAAGAAATGGTTACCGAAATTATGTTTGATCTGAGAGCTAGTGGCCAAAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT