1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...cactcgtttgcggttcagctagaaattaagaataaacctaatttattatacgttttagaaaatttgtcaacgttcacttcaatttgatggtgttttgcagTTGGAGGAGCTAAGAAATGATATTGTTGACCTAAAAGAGATGTACAGGGAGCAGGTGGATCTTCTTGTTAGCCAG
species | Zea mays |
transcript | GRMZM2G150257_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AACAAAGGCACTTCCAAGCTCTAGAGTTAATGGGGGAACGTGATGAAGAG TTGGAGGAGCTAAGAAATGATATTGTTGACCTAAAAGAGATGTACAGGGAGEST: gi|14244349|gb|BG842317.2|BG842317
genomic: AACAAAGGCACTTCCAAGCTCTAGAGTTAATGGGGGAACGTGATGAAGAGgtattgttcc ... tgttttgcagTTGGAGGAGCTAAGAAATGATATTGTTGACCTAAAAGAGATGTACAGGGAG
EST: AACAAAGGCACTTCCAAGCTCTAGAGTTAATGGGGGAACGTGATGAAGAG TTGGAGGAGCTAAGAAATGATATTGTTGACCTAAAAGAGATGTACAGGGAGEST: gi|261490390|gb|GO359881.1|GO359881
genomic: AACAAAGGCACTTCCAAGCTCTAGAGTTAATGGGGGAACGTGATGAAGAGgtattgttcc ... tgttttgcagTTGGAGGAGCTAAGAAATGATATTGTTGACCTAAAAGAGATGTACAGGGAG
EST: AACAAAGGCACTTCCAAGCTCTAGAGTTAATGGGGGAACGTGATGAAGAG TTGGAGGAGCTAAGAAATGATATTGTTGACCTAAAAGAGATGTACAGGGAGEST: gi|211457221|gb|FK982203.1|FK982203
genomic: AACAAAGGCACTTCCAAGCTCTAGAGTTAATGGGGGAACGTGATGAAGAGgtattgttcc ... tgttttgcagTTGGAGGAGCTAAGAAATGATATTGTTGACCTAAAAGAGATGTACAGGGAG
EST: AACAAAGGCACTTCCAAGCTCTAGAGTTAATGGGGGAACGTGATGAAGAG TTGGAGGAGCTAAGAAATGATATTGTTGACCTAAAAGAGATGTACAGGGAGEST: gi|116821521|gb|EC864841.1|EC864841
genomic: AACAAAGGCACTTCCAAGCTCTAGAGTTAATGGGGGAACGTGATGAAGAGgtattgttcc ... tgttttgcagTTGGAGGAGCTAAGAAATGATATTGTTGACCTAAAAGAGATGTACAGGGAG
EST: AACAAAGGCACTTCCAAGCTCTAGAACTAATGGGGGAACGTGATGAAGAG TTGGAGGAGCTAAGCAAATGATATTEST: gi|60341571|gb|DN208544.1|DN208544
genomic: AACAAAGGCACTTCCAAGCTCTAGAGTTAATGGGGGAACGTGATGAAGAGgtattgttcc ... tgttttgcagTTGGAGGAGCTAAG-AAATGATATT
EST: AACAAAGGCACTTCCAAGCTCTAGAGTTAATGGGGGAACGTGATGAAGAG TTGGAGGAGCTAAGAAATGATATTGTTGACCTAAAAGAGATGTACAGGGAGEST: gi|33093995|gb|CF053989.1|CF053989
genomic: AACAAAGGCACTTCCAAGCTCTAGAGTTAATGGGGGAACGTGATGAAGAGgtattgttcc ... tgttttgcagTTGGAGGAGCTAAGAAATGATATTGTTGACCTAAAAGAGATGTACAGGGAG
EST: AACAAAGGCACTTCCAAGCTCTAGAACTAATGGGGGAACGTGATGAAGAG TTGGAGGAGCTAAGAAATGATATTGTTGACCTAAAAGAGATGTACEST: gi|60340800|gb|DN207773.1|DN207773
genomic: AACAAAGGCACTTCCAAGCTCTAGAGTTAATGGGGGAACGTGATGAAGAGgtattgttcc ... tgttttgcagTTGGAGGAGCTAAGAAATGATATTGTTGACCTAAAAGAGATGTAC
EST: AACAAAGGCACTTCCAAGCTCTAGAGTTAATGGGGGAACGTGATGAAGAG TTGGAGGAGCTAAGAAATGATATTGTTGACCTAAAAGAGATGTACAGGGAG
genomic: AACAAAGGCACTTCCAAGCTCTAGAGTTAATGGGGGAACGTGATGAAGAGgtattgttcc ... tgttttgcagTTGGAGGAGCTAAGAAATGATATTGTTGACCTAAAAGAGATGTACAGGGAG
ttatacgttttagaaaatttgtcaacgttcacttcaatttgatggtgttttgcagTTGGAGGAGCTAAGAAATGATATTGTTGACCTAAAAGAGATGTACAGGGAGCAGGTGGATCTTCTTGTTAGCCAG
atttgat putative branch site (score: 144)
ttttagaaaatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactcgtttgcggttcagctagaaattaagaataaacctaatttattatacgttttagaaaatttgtcaacgttcacttcaatttgatggtgttttgcagTTGGAGGAGCTAAGAAATGATATTGTTGACCTAAAAGAGATGTACAGGGAGCAGGTGGATCTTCTTGTTAGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - -ttcagct
- - - - - - - - - - - - - - -gaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgatg