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gtaagtgactggtaatttgtgcttctggttcatgagtgttctgattaaatggaaatccttctctgcctgtagGTTTGCTTTTACTATATTGAAAAGGTTCATGCCAGAAGATAAACTTGCAGATGTAAAGGGTGCCACCCTCACCGCTGATGGAACAGGAGTTGTATTTGAT
species | Zea mays |
transcript | GRMZM2G149520_T02 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GATTACAGTACACTACATCTTCAAACTGGCAGACCGATGTGGTCACCTGG GTTTGCTTTTACTATATTGAAAAGGTTCATGCCAGAAGATAAACTTGCAGAEST: gi|31353684|gb|CD438041.1|CD438041
genomic: GATTACAGTACACTACATCTTCAAACTGGCAGACCGATGTGGTCACCTGGgtaagtgact ... ctgcctgtagGTTTGCTTTTACTATATTGAAAAGGTTCATGCCAGAAGATAAACTTGCAGA
EST: GATTACAGTACACTACATCTTCAAACTGGCAGACCGATGTGGTCACCTGG GTTTGCTTTTACTATATTGAAAAGGTTCATGCCAGAAGATAAACTTGCAGAEST: gi|101394193|gb|EB819031.1|EB819031
genomic: GATTACAGTACACTACATCTTCAAACTGGCAGACCGATGTGGTCACCTGGgtaagtgact ... ctgcctgtagGTTTGCTTTTACTATATTGAAAAGGTTCATGCCAGAAGATAAACTTGCAGA
EST: GATTACAGTACACTACATCTTCAAACTGGCAGACCGATGTGGTCACCTGG GTTTGCTTTTACTATA-TGAAAAAGGTTCATGCCAGAAGATAAACTTGCAGEST: gi|78026164|gb|DV494551.1|DV494551
genomic: GATTACAGTACACTACATCTTCAAACTGGCAGACCGATGTGGTCACCTGGgtaagtgact ... ctgcctgtagGTTTGCTTTTACTATATTG-AAAAGGTTCATGCCAGAAGATAAACTTGCAG
EST: GATTACAGTACACTACATCTTCAAACTGGCAGACCGATGTGGTCACCTGG GTTTGCTTTTACTATATTGAAAAGGTTCATGCCAGAAGATAAACTTGCAGAEST: gi|32835099|gb|CD974777.1|CD974777
genomic: GATTACAGTACACTACATCTTCAAACTGGCAGACCGATGTGGTCACCTGGgtaagtgact ... ctgcctgtagGTTTGCTTTTACTATATTGAAAAGGTTCATGCCAGAAGATAAACTTGCAGA
EST: ACACTACATCTTCAAACTGGCAGACCGATGTGGTCACCTGG GTTTGCTTTTACTATATTGAAAAGGTTCATGCCAGAAGATAAACTTGCAGAEST: gi|24766670|gb|CA401817.1|CA401817
genomic: ACACTACATCTTCAAACTGGCAGACCGATGTGGTCACCTGGgtaagtgact ... ctgcctgtagGTTTGCTTTTACTATATTGAAAAGGTTCATGCCAGAAGATAAACTTGCAGA
EST: GATTACAGTACACTACATCTTCAAACTGGCAGACCGATGTGGTCACCTGG GTTTGCTTTTACTATATTGAAAAGGTTCATGCCAGAAGATAAACTTGCAGA
genomic: GATTACAGTACACTACATCTTCAAACTGGCAGACCGATGTGGTCACCTGGgtaagtgact ... ctgcctgtagGTTTGCTTTTACTATATTGAAAAGGTTCATGCCAGAAGATAAACTTGCAGA
tgtgcttctggttcatgagtgttctgattaaatggaaatccttctctgcctgtagGTTTGCTTTTACTATATTGAAAAGGTTCATGCCAGAAGATAAACTTGCAGATGTAAAGGGTGCCACCCTCACCGCTGATGGAACAGGAGTTGTATTTGAT
ttctgat putative branch site (score: 141)
tccttctctgcctgt putative PPT
tgattaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgactggtaatttgtgcttctggttcatgagtgttctgattaaatggaaatccttctctgcctgtagGTTTGCTTTTACTATATTGAAAAGGTTCATGCCAGAAGATAAACTTGCAGATGTAAAGGGTGCCACCCTCACCGCTGATGGAACAGGAGTTGTATTTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA