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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttatagttgagagcttgacgtgaataaatttagctgtatatgcttggataactaatagtttggtcccgaggaaccttatattttaaaactaaatttgcagGCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG

Basic information

species Zea mays
transcript GRMZM2G147500_T02
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71427991|gb|DR809041.1|DR809041
EST:     TTGAGCTTGAAGCTCAACTGGTTGAAGCAAGAAGCATCATCCAAGAGCAG                         GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG
genomic: TTGAGCTTGAAGCTCAACTGGTTGAAGCAAGAAGCATCATCCAAGAGCAGgtttgtgcat ... aaatttgcagGCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG
EST: gi|31405728|gb|CD484460.1|CD484460
EST:     TTGAGCTTGAAGCTCAACTGGTTGAAGCAAGAAGCATCATCCAAGAGCAG                         GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG
genomic: TTGAGCTTGAAGCTCAACTGGTTGAAGCAAGAAGCATCATCCAAGAGCAGgtttgtgcat ... aaatttgcagGCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG
EST: gi|60342233|gb|DN209206.1|DN209206
EST:     TTGAGCTTGAAGCTCAACTGGTTGAAGCAAGAAGCATCATCCAAGAGCAG                         GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG
genomic: TTGAGCTTGAAGCTCAACTGGTTGAAGCAAGAAGCATCATCCAAGAGCAGgtttgtgcat ... aaatttgcagGCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG
EST: gi|32943705|gb|CF048524.1|CF048524
EST:     TTGAGCTTGAAGCTCAACTGGTTGAAGCAAGAAGTATCATCCAAGAGCAG                         GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG
genomic: TTGAGCTTGAAGCTCAACTGGTTGAAGCAAGAAGCATCATCCAAGAGCAGgtttgtgcat ... aaatttgcagGCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG
EST: gi|60350197|gb|DN217170.1|DN217170
EST:     TTGAGCTTGAAGCTCAACTGGTTGAAGCAAGAAGCATCATCCAAGAGCAG                         GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG
genomic: TTGAGCTTGAAGCTCAACTGGTTGAAGCAAGAAGCATCATCCAAGAGCAGgtttgtgcat ... aaatttgcagGCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG
EST: gi|32911044|gb|CF015856.1|CF015856
EST:     TTGAGCTTGAAGCTCAACTGGTTGAAGCAAGAAGCATCATCCAAGAGCAG                         GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG
genomic: TTGAGCTTGAAGCTCAACTGGTTGAAGCAAGAAGCATCATCCAAGAGCAGgtttgtgcat ... aaatttgcagGCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG
EST: gi|91872286|gb|EB402243.1|EB402243
EST:     TTGAGCTTGAAGCTCAACTGGTTGAAGCAAGAAGCATCATCCAAGAGCAG                         GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG
genomic: TTGAGCTTGAAGCTCAACTGGTTGAAGCAAGAAGCATCATCCAAGAGCAGgtttgtgcat ... aaatttgcagGCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG
EST: gi|148955451|gb|EC901042.2|EC901042
EST:     TTGAGCTTGAAGCTCAACTGGTTGAAGCAAGAAGCATCATCCAAGAGCAG                         GCCTGCATCATGTCCAAGCACTTCAAGTTTGATAAGCCAAG
genomic: TTGAGCTTGAAGCTCAACTGGTTGAAGCAAGAAGCATCATCCAAGAGCAGgtttgtgcat ... aaatttgcagGCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggataactaatagtttggtcccgaggaaccttatattttaaaactaaatttgcagGCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG
                                         aactaaa  putative branch site (score: 2)
                          aaccttatattttaaa  TA-rich tract