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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgcgcgcgtgaatcatttcctttccgggctatgctcacagctaccgatgagagttattattggcgccaatcttttttgacagGCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTCGGAATCCTCTCCAACGCGGAGGTCATCGCGATCAGCCAAGGTCACCACA

Basic information

species Zea mays
transcript GRMZM2G146463_T01
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78113279|gb|DV531671.1|DV531671
EST:     TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGGCATCGCCAAG                         GCTCCCCTGGTCATCGGC
genomic: TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgc ... tttttgacagGCTCCCCTGGTCATCGGC
EST: gi|23199550|gb|BU582115.1|BU582115
EST:     TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTGTGGGCCATCGCCAAG                         GCTCCCCTGATCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTG
genomic: TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgc ... tttttgacagGCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
EST: gi|22472587|gb|BU037067.1|BU037067
EST:     TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTGTGGGCCATCGCCAAG                         GCTCCCCTGATCATCGGCTGCGACGT
genomic: TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgc ... tttttgacagGCTCCCCTGGTCATCGGCTGCGACGT
EST: gi|22935898|gb|BU572173.1|BU572173
EST:     TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTGTGGGCCATCGCCAAG                         GCTCCCCTGATCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTG
genomic: TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgc ... tttttgacagGCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctatgctcacagctaccgatgagagttattattggcgccaatcttttttgacagGCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTCGGAATCCTCTCCAACGCGGAGGTCATCGCGATCAGCCAAGGTCACCACA
    tgctcac  putative branch site (score: 2)
                                          tctttttt  putative PPT
                        agttattatt  TA-rich tract