1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgcaacgttttcacttcataataatactgctggctacagatttttacatcttctcttgaacagttgttttgcattcttccatgcacattatcattttcccctgtaaacgctcttgtatgaaaaactacagtaaatgtgtagtgtaccatatttttgggttttgcgtgtgcgctaacctgggttttgttgcagATTCTATTGAGAGAGTGTGACAATGAGTTATCAAGAAATTTCATGAAAATACTAAGATACCTGCGGGAGAAGGATCCTTCTTATCACCAGCTATCCCTTG
species | Zea mays |
transcript | GRMZM2G143725_T02 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGAACAACATTCTTGGAGTGAGCTTGGCAAACTTCCCTGACCTATCTAAG ATTCTATTGAGAGAGTGTGACAATGAGTTATCAAGAAATTTCATGAAAATAEST: gi|211056537|gb|FL371329.1|FL371329
genomic: TGAACAACATTCTTGGAGTGAGCTTGGCAAACTTCCCTGACCTATCTAAGgtgcaacgtt ... tttgttgcagATTCTATTGAGAGAGTGTGACAATGAGTTATCAAGAAATTTCATGAAAATA
EST: TGAACAACATTCTTGGAGTGAGCTTGGCAAACTTCCCTGACCTATCTAAG ATTCTATTGAGAGAGTGTGACAATGAGTTATCAAGAAATTTCATGAAAATAEST: gi|83278191|gb|DV942199.1|DV942199
genomic: TGAACAACATTCTTGGAGTGAGCTTGGCAAACTTCCCTGACCTATCTAAGgtgcaacgtt ... tttgttgcagATTCTATTGAGAGAGTGTGACAATGAGTTATCAAGAAATTTCATGAAAATA
EST: TGAACAACATTCTTGGAGTGAGCTTGGCAAACTTCCCTGACCTATCTAAG ATTCTATTGAGAGAGTGTGACAATGAGTTATCAAGAAATTTCATGAAAATAEST: gi|71445514|gb|DR826564.1|DR826564
genomic: TGAACAACATTCTTGGAGTGAGCTTGGCAAACTTCCCTGACCTATCTAAGgtgcaacgtt ... tttgttgcagATTCTATTGAGAGAGTGTGACAATGAGTTATCAAGAAATTTCATGAAAATA
EST: TGAACAACATTCTTGGAGTGAGCTTGGCAAACTTCCCTGACCTATCTAAG ATTCTATTGAGAGAGTGTGACAATGAGTTATCAAGAAATTTCATGAAAATAEST: gi|211478592|gb|FL369719.1|FL369719
genomic: TGAACAACATTCTTGGAGTGAGCTTGGCAAACTTCCCTGACCTATCTAAGgtgcaacgtt ... tttgttgcagATTCTATTGAGAGAGTGTGACAATGAGTTATCAAGAAATTTCATGAAAATA
EST: TGAACAACATTCTTGGAGTGAGCTTGGCAAACTTCCCTGACCTATCTAAG ATTCTATTGAGAGAGTGTGACAATGAGTTATCAAGAAATTTCATGAAAATAEST: gi|5915463|gb|AW053104.1|AW053104
genomic: TGAACAACATTCTTGGAGTGAGCTTGGCAAACTTCCCTGACCTATCTAAGgtgcaacgtt ... tttgttgcagATTCTATTGAGAGAGTGTGACAATGAGTTATCAAGAAATTTCATGAAAATA
EST: ACAACATTCTTGGAGTGAGCTTGGCAAACTTCCCTGACCTATCTAAG ATTCTATTGAGAGAGTGTGACAATGAGTTATCAAGAAATTTCATGAAAATAEST: gi|211424168|gb|FL418879.1|FL418879
genomic: ACAACATTCTTGGAGTGAGCTTGGCAAACTTCCCTGACCTATCTAAGgtgcaacgtt ... tttgttgcagATTCTATTGAGAGAGTGTGACAATGAGTTATCAAGAAATTTCATGAAAATA
EST: TGAACAACATTCTTGGAGTGAGCTTGGCAAACTTCCCTGACCTATCTAAG ATTCTATTGAGAGAGTGTGACAATGAGTTATCAAGAAATTTCATGAAAATAEST: gi|211169647|gb|FL398212.1|FL398212
genomic: TGAACAACATTCTTGGAGTGAGCTTGGCAAACTTCCCTGACCTATCTAAGgtgcaacgtt ... tttgttgcagATTCTATTGAGAGAGTGTGACAATGAGTTATCAAGAAATTTCATGAAAATA
EST: GAACAACATTCTTGGAGTGAGCTTGGCAAACTTNCCCTGACCTATCTAAG ATTCTATTGAGAGAGTGTGACAATGAGTTATCAAGAAATTTCATGAAAATAEST: gi|211504702|gb|FL413778.1|FL413778
genomic: GAACAACATTCTTGGAGTGAGCTTGGCAAACTT-CCCTGACCTATCTAAGgtgcaacgtt ... tttgttgcagATTCTATTGAGAGAGTGTGACAATGAGTTATCAAGAAATTTCATGAAAATA
EST: TGAACAACATTCTTGGAGTGAGCTTGGCAAACTTCCCTGACCTATCTAAG ATTCTATTGAGAGAGTGTGACAATGAGTTATCAAGAAATTTCATGAAAATA
genomic: TGAACAACATTCTTGGAGTGAGCTTGGCAAACTTCCCTGACCTATCTAAGgtgcaacgtt ... tttgttgcagATTCTATTGAGAGAGTGTGACAATGAGTTATCAAGAAATTTCATGAAAATA
gtagtgtaccatatttttgggttttgcgtgtgcgctaacctgggttttgttgcagATTCTATTGAGAGAGTGTGACAATGAGTTATCAAGAAATTTCATGAAAATACTAAGATACCTGCGGGAGAAGGATCCTTCTTATCACCAGCTATCCCTTG
cgctaac putative branch site (score: 54)
ttttgtt putative PPT
atattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcaacgttttcacttcataataatactgctggctacagatttttacatcttctcttgaacagttgttttgcattcttccatgcacattatcattttcccctgtaaacgctcttgtatgaaaaactacagtaaatgtgtagtgtaccatatttttgggttttgcgtgtgcgctaacctgggttttgttgcagATTCTATTGAGAGAGTGTGACAATGAGTTATCAAGAAATTTCATGAAAATACTAAGATACCTGCGGGAGAAGGATCCTTCTTATCACCAGCTATCCCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA