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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actagttaatgctagtttcctttcatatgatttggaactgcctgaacagccgccatatgctatcatcgttaatgcaagcatactactacttttttttcagGTGAAGGCTGAAGCCATATATCCTGTAAGTAACGCGCCAAATACCTTTTGAGACTTAATAATCTTGTTTTGTTCCGCCTGTCTCAAGCCGGGTTCCTTCA

Basic information

species Zea mays
transcript GRMZM2G143356_T01
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211269252|gb|FK955991.1|FK955991
EST:     TTATCTAATAGTTGCTGCCAGTTTCTTTGTTCACGTTGATCCACAATCAA                         GTGAAGGCTGAAGCCATATATCCTGTAAGTAACGCGCCAAATACCTTTTGA
genomic: TTATCTAATAGTTGCTGCCAGTTTCTTTGTTCACGTTGATCCACAATCAAgtgagtagga ... tttttttcagGTGAAGGCTGAAGCCATATATCCTGTAAGTAACGCGCCAAATACCTTTTGA
EST: gi|86474171|gb|DY240541.1|DY240541
EST:     TTATTTAATAGTTGCTGCCAGTTTCTTTGTTCACGTTGATCCACAATCAA                         GTGAAGGCTGAAGCCATATATCCTGTAAGTAACGCGCCAAATACCTTTTGA
genomic: TTATCTAATAGTTGCTGCCAGTTTCTTTGTTCACGTTGATCCACAATCAAgtgagtagga ... tttttttcagGTGAAGGCTGAAGCCATATATCCTGTAAGTAACGCGCCAAATACCTTTTGA
EST: gi|211269251|gb|FK955990.1|FK955990
EST:     TTATCTAATAGTTGCTGCCAGTTTCTTTGTTCACGTTGATCCACAATCAA                         GTGAAGGCTGAAGCCATATATCCTGTAAGTAACGCGCCAAATACCTTTTGA
genomic: TTATCTAATAGTTGCTGCCAGTTTCTTTGTTCACGTTGATCCACAATCAAgtgagtagga ... tttttttcagGTGAAGGCTGAAGCCATATATCCTGTAAGTAACGCGCCAAATACCTTTTGA
EST: gi|211269249|gb|FK955988.1|FK955988
EST:     TTATCTAATAGTTGCTGCCAGTTTCTTTGTTCACGTTGATCCACAATCAA                         GTGAAGGCTGAAGCCATATATCCTGTAAGTAACGCGCCAAATACCTTTTGA
genomic: TTATCTAATAGTTGCTGCCAGTTTCTTTGTTCACGTTGATCCACAATCAAgtgagtagga ... tttttttcagGTGAAGGCTGAAGCCATATATCCTGTAAGTAACGCGCCAAATACCTTTTGA
EST: gi|211269248|gb|FK955987.1|FK955987
EST:     TTATCTAATAGTTGCTGCCAGTTTCTTTGTTCACGTTGATCCACAATCAA                         GTGAAGGCTGAAGCCATATATCCTGTAAGTAACGCGCCAAATACCTTTTGA
genomic: TTATCTAATAGTTGCTGCCAGTTTCTTTGTTCACGTTGATCCACAATCAAgtgagtagga ... tttttttcagGTGAAGGCTGAAGCCATATATCCTGTAAGTAACGCGCCAAATACCTTTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acagccgccatatgctatcatcgttaatgcaagcatactactacttttttttcagGTGAAGGCTGAAGCCATATATCCTGTAAGTAACGCGCCAAATACCTTTTGAGACTTAATAATCTTGTTTTGTTCCGCCTGTCTCAAGCCGGGTTCCTTCA
                     cgttaat  putative branch site (score: 4)
                                     ctactacttttttttc  putative PPT
                                      tactactttttttt  TA-rich tract