1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaatgctacttttcaaagaaaatgtttgaagcaaaactattcaacttctaagcatgttattgtttcttcatgtaaattgatttccatacaccaagctgttttgagtagcatacatgagcacttgtcgctcaaatgtagtaatatggaactaatcgtatctgtattatttactttttcttgtgaacagGCGGCAGGTCCAGACTACCTCTAGAGCTACCAGATCCCTAAGTACTCTGACAAGGGCCGTTAGACGAG
species | Zea mays |
transcript | GRMZM2G142334_T02 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TCTGGTAGCAGTGAAGCAACAACACTTGAAGCAACCCGAAACCCTACAAG GCGGCAGGTCCAGACTACCTCTAGAGCTACCAGATCCCTAAGTACTCTGACEST: gi|32826308|gb|CD965986.1|CD965986
genomic: TCTGGTAGCAGTGAAGCAACAACACTTGAAGCAACCCGAAACCCTACAAGgtaatgctac ... ttgtgaacagGCGGCAGGTCCAGACTACCTCTAGAGCTACCAGATCCCTAAGTACTCTGAC
EST: TCTGGTAGCAGTGAAGCAACAACACTTGAAGCAACCCGAAACCCTACAAG GCGGCAGGTCCAGACTACCTCTAGAGCTACCAGATCEST: gi|67016408|gb|CO445157.1|CO445157
genomic: TCTGGTAGCAGTGAAGCAACAACACTTGAAGCAACCCGAAACCCTACAAGgtaatgctac ... ttgtgaacagGCGGCAGGTCCAGACTACCTCTAGAGCTACCAGATC
EST: TCTGGTAGCAGTGAAGCAACAACACTTGAAGCAACCCGAAACCCTACAAG GCGGCAGGTCCAGACTACCTCTAGAGCTACCAGATCCCTAAGTACTCTGACEST: gi|71417754|gb|DR804198.1|DR804198
genomic: TCTGGTAGCAGTGAAGCAACAACACTTGAAGCAACCCGAAACCCTACAAGgtaatgctac ... ttgtgaacagGCGGCAGGTCCAGACTACCTCTAGAGCTACCAGATCCCTAAGTACTCTGAC
EST: TCTGGTAGCAGTGAAGCAACAACACTTGAAGCAACCCGAAACCCTACAAG GCGGCAGGTCCAGACTACCTCTAGAGCTACCAGATCCTTAAGTACTCTGACEST: gi|211530906|gb|FL193982.1|FL193982
genomic: TCTGGTAGCAGTGAAGCAACAACACTTGAAGCAACCCGAAACCCTACAAGgtaatgctac ... ttgtgaacagGCGGCAGGTCCAGACTACCTCTAGAGCTACCAGATCCCTAAGTACTCTGAC
EST: TCTGGTAGCAGTGAAGCAACAACACTTGAAGCAACCCGAAACCCTACAAG GCGGCAGGTCCAGACTACCTCTAGAGCTACCAGATCCCTAAGTACTCTGACEST: gi|6012734|gb|AW062171.1|AW062171
genomic: TCTGGTAGCAGTGAAGCAACAACACTTGAAGCAACCCGAAACCCTACAAGgtaatgctac ... ttgtgaacagGCGGCAGGTCCAGACTACCTCTAGAGCTACCAGATCCCTAAGTACTCTGAC
EST: CCGAAACCCTACAAG GCGGCAGGTCCAGACTACCTCTAGAGCTACCAGATCCCTAAGTACTCTGACEST: gi|211530907|gb|FL193983.1|FL193983
genomic: CCGAAACCCTACAAGgtaatgctac ... ttgtgaacagGCGGCAGGTCCAGACTACCTCTAGAGCTACCAGATCCCTAAGTACTCTGAC
EST: TCTGGTAGCAGTGAAGCAACAACACTTGAAGCAACCCGAAACCCTACAAG GCGGCAGGTCCAGACTACCTCTAGAGCTACCAGATCCCTAAGTACTCTGAC
genomic: TCTGGTAGCAGTGAAGCAACAACACTTGAAGCAACCCGAAACCCTACAAGgtaatgctac ... ttgtgaacagGCGGCAGGTCCAGACTACCTCTAGAGCTACCAGATCCCTAAGTACTCTGAC
atgtagtaatatggaactaatcgtatctgtattatttactttttcttgtgaacagGCGGCAGGTCCAGACTACCTCTAGAGCTACCAGATCCCTAAGTACTCTGACAAGGGCCGTTAGACGAG
aactaat putative branch site (score: 89)
ttatttactttttctt putative PPT
tatctgtattatttac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgctacttttcaaagaaaatgtttgaagcaaaactattcaacttctaagcatgttattgtttcttcatgtaaattgatttccatacaccaagctgttttgagtagcatacatgagcacttgtcgctcaaatgtagtaatatggaactaatcgtatctgtattatttactttttcttgtgaacagGCGGCAGGTCCAGACTACCTCTAGAGCTACCAGATCCCTAAGTACTCTGACAAGGGCCGTTAGACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT