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...tatagaccgttcctgctgtgatgatctctcttcccgttctcaattaatgtgaacaaatattctaactccaaattcacaagtctgagccttttttttgcagTGCACTGGAGCCATCATCTGTAGCTAAAGCCATATATCCGGTTTTAATCTCGTATTCCTCGCCTGACAAGCAAGCATTCCCACGGCACACTCTGAGCCAT
species | Zea mays |
transcript | GRMZM2G141735_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GAGGAAGGCGTGCACCCAGATTACAGGATATATCTACAATGCCTTTTCAG TGCACTGGAGCCATCATCTGTAGCTAAAGCCATATATCCGGTTTTAATCTCEST: gi|76911766|gb|DV164421.1|DV164421
genomic: GAGGAAGGCGTGCACCCAGATTACAGGATATATCTACAATGCCTTTTCAGgttcatattt ... ttttttgcagTGCACTGGAGCCATCATCTGTAGCTAAAGCCATATATCCGGTTTTAATCTC
EST: CCAGATTACAGGATATATCTACAATGCCTTTTCAG TGCACTGGAGCCATCATCTGTAGCTAAAGCCATATATCCGGTTTTAATCTCEST: gi|211038924|gb|FL472335.1|FL472335
genomic: CCAGATTACAGGATATATCTACAATGCCTTTTCAGgttcatattt ... ttttttgcagTGCACTGGAGCCATCATCTGTAGCTAAAGCCATATATCCGGTTTTAATCTC
EST: GAGGAAGGCGTGCACCCAGATTACAGGATATATCTACAATGCCTTTTCAG TGCACTGGAGCCATCATCTGTAGCTAAAGCCATATATCNGG-TTTAATNCTEST: gi|110195680|gb|EC877577.1|EC877577
genomic: GAGGAAGGCGTGCACCCAGATTACAGGATATATCTACAATGCCTTTTCAGgttcatattt ... ttttttgcagTGCACTGGAGCCATCATCTGTAGCTAAAGCCATATATCCGGTTTTAAT-CT
EST: ATTACAGGATATATTTACAATGCCTTTTCAG TGCCCTGGAGCCATCATCTGTAGTTAAAGCCATATATCCGGTTTTAATTTC
genomic: ATTACAGGATATATCTACAATGCCTTTTCAGgttcatattt ... ttttttgcagTGCACTGGAGCCATCATCTGTAGCTAAAGCCATATATCCGGTTTTAATCTC
aatgtgaacaaatattctaactccaaattcacaagtctgagccttttttttgcagTGCACTGGAGCCATCATCTGTAGCTAAAGCCATATATCCGGTTTTAATCTCGTATTCCTCGCCTGACAAGCAAGCATTCCCACGGCACACTCTGAGCCAT
ttctaac putative branch site (score: 66)
ccttttttttgc putative PPT
aacaaatattctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatagaccgttcctgctgtgatgatctctcttcccgttctcaattaatgtgaacaaatattctaactccaaattcacaagtctgagccttttttttgcagTGCACTGGAGCCATCATCTGTAGCTAAAGCCATATATCCGGTTTTAATCTCGTATTCCTCGCCTGACAAGCAAGCATTCCCACGGCACACTCTGAGCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - -cctgctg
- - - - - - - - - tgatgat
- - - - - - - - - - - - - - - - - - - - - - - - - gaacaaa