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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcctcgatataacatatttcacttcttcctggagcataatctgttaactggagctgatcttttcagGAGAAGAAAAGTATAAGGCCATCCTTTTCCGCTGAACGGATATTTGGTGGAGTGTTACTTGCTATGTGTACAAATGACTTCATTTGCTTCTATGATTGGG

Basic information

species Zea mays
transcript GRMZM2G141587_T01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G141587_T05 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os02g11840.1 (Oryza sativa), 3'ss of exon 3
-----------------------------gtttgcctcgata-taacatatttcacttcttcctggagcataatctgttaactggagctgatcttttcagGAGAAGAAAAGTATAAGGCCATCCTTTTCCGCTGAACGGATATTTGGTGGAGTGTTACTTGCTATGTGTACAAATGACTTCATTTGCTTCTATGATTGGG
                             | ||  | | | | |  | | |        |||    | |||| | || | |    | ||     ||||||||||  || |||||||| ||| | ||||| || ||||| |||||||||||||| || || ||||||||||||||||| || ||||||||| |||| ||||
gttacttatatttattagccagctgccaagcttatcacaacaatctcctttactgtggtttctgaaaacatagtatgatgataaaacctatctatttcagGAGAGAAAGAGTATAAGACCACCATTTTCTGCAGAACGTATATTTGGTGGAGTATTGCTGGCTATGTGTACAAATGATTTTATTTGCTTCCATGACTGGG

upper sequence: GRMZM2G141587_T05 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os02g11830.2 (Oryza sativa), 3'ss of exon 12
------------------------------gtttgcctcgatataacatatttcacttcttcctggagcataatctgttaactggagctgatcttttcagGAGAAGAAAAGTATAAGGCCATCCTTTTCCGCTGAACGGATATTTGGTGGAGTGTTACTTGCTATGTGTACAAATGACTTCATTTGCTTCTATGATTGGG
                              | ||  | | | |       || |  |  || ||| | |||| | || | |    | ||     ||||||||||  || |||||||| ||| | ||||| || || || |||||||||||||| || || ||||||||||||||||| || ||||||||| |||| ||||
tgttacttatatttattaggcagctgccaagcttatcacaacaatctcctttactgtggtttctgaaacatagtatgatgataaaacctatctatttcagGAGAGAAAGAGTATAAGACCACCATTTTCTGCAGAGCGTATATTTGGTGGAGTATTGCTGGCTATGTGTACAAATGATTTTATTTGCTTCCATGACTGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32928123|gb|CF032935.1|CF032935
EST:     CCATCAGAGAAAGCACCTCGAGGATAAAGATATACAGTAAAAATTTCCAG                         GAGAAGAAAAGTATAAGGCCATCCTTTTCCGCTGAACGGATATTTGGTGGA
genomic: CCATCAGAGAAAGCACCTCGAGGATAAAGATATACAGTAAAAATTTCCAGgtttgcctcg ... atcttttcagGAGAAGAAAAGTATAAGGCCATCCTTTTCCGCTGAACGGATATTTGGTGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatatttcacttcttcctggagcataatctgttaactggagctgatcttttcagGAGAAGAAAAGTATAAGGCCATCCTTTTCCGCTGAACGGATATTTGGTGGAGTGTTACTTGCTATGTGTACAAATGACTTCATTTGCTTCTATGATTGGG
                                              tcttttc  CT-rich tract
                        ataatct  TA-rich tract