1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...catgatgattccgcacatgctcggcttgtggctgcgaatttcccaagccactggtgactgacatatatgccactgaatgatttcgtttaattcatcccagGCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCCAGGCCTCATGTTGTCACTGAAGATCGTGCGACGGCGCCACCTCAGGCTC
species | Zea mays |
transcript | GRMZM2G140524_T02 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AAATGTTCGGGTNGCTGTCACCGGCAATAGTTCAG GCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCCEST: gi|211431329|gb|FL160081.1|FL160081
genomic: AAATGTTCGGGTTGCTGTCACCGGCAATAGTTCAGgtgaggaaag ... ttcatcccagGCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCC
EST: CAGTTGATGGTTTTGAAATGTTCGGGTTGCTGTCACCGGCAATAGTTCAG GCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCCEST: gi|74239883|gb|DT647797.1|DT647797
genomic: CAGTTGATGGTTTTGAAATGTTCGGGTTGCTGTCACCGGCAATAGTTCAGgtgaggaaag ... ttcatcccagGCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCC
EST: CAGTTGATGGTTTTGAAATGTTCCGGTTGCTGTCACCGGCAATTGTTCAG GCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCCEST: gi|22819921|gb|BU500011.1|BU500011
genomic: CAGTTGATGGTTTTGAAATGTTCGGGTTGCTGTCACCGGCAATAGTTCAGgtgaggaaag ... ttcatcccagGCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCC
EST: CAGTTGATGGTTTTGAAATGTTCGGGTTGCTGTCACCGGCAATAGTTCAG GCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCCEST: gi|211431328|gb|FL160080.1|FL160080
genomic: CAGTTGATGGTTTTGAAATGTTCGGGTTGCTGTCACCGGCAATAGTTCAGgtgaggaaag ... ttcatcccagGCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCC
EST: CAGTTGATGGTTTTGAAATGTTCGGGTTGCTGTCACCGGCAATAGTTCAG GCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCCEST: gi|87156370|gb|DY401159.1|DY401159
genomic: CAGTTGATGGTTTTGAAATGTTCGGGTTGCTGTCACCGGCAATAGTTCAGgtgaggaaag ... ttcatcccagGCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCC
EST: CAGTTGATGGTTTTGAAATGTTCGGGTTGCTGTCACCGGCAATAGTTCAG GCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCCEST: gi|26560092|gb|CA832327.1|CA832327
genomic: CAGTTGATGGTTTTGAAATGTTCGGGTTGCTGTCACCGGCAATAGTTCAGgtgaggaaag ... ttcatcccagGCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCC
EST: CAGTTGATGGTTTTGAAATGTTCGGGTTGCTGTCACCGGCAATAGTTCAG GCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCCEST: gi|60355691|gb|DN222664.1|DN222664
genomic: CAGTTGATGGTTTTGAAATGTTCGGGTTGCTGTCACCGGCAATAGTTCAGgtgaggaaag ... ttcatcccagGCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCC
EST: CAGTTGATGGTTTTGAAATGTTCGGGTTGCTGTCACCGGCAATAGTTCAG GCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCC
genomic: CAGTTGATGGTTTTGAAATGTTCGGGTTGCTGTCACCGGCAATAGTTCAGgtgaggaaag ... ttcatcccagGCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCC
agccactggtgactgacatatatgccactgaatgatttcgtttaattcatcccagGCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCCAGGCCTCATGTTGTCACTGAAGATCGTGCGACGGCGCCACCTCAGGCTC
ttcatccc CT-rich tract
tttaattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgatgattccgcacatgctcggcttgtggctgcgaatttcccaagccactggtgactgacatatatgccactgaatgatttcgtttaattcatcccagGCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCCAGGCCTCATGTTGTCACTGAAGATCGTGCGACGGCGCCACCTCAGGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA