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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttcagttccatgcatgccatgtagtaccagtgcatggtgttaagaaagatactgaatgcaatcgtccttgatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCATTATTTCACGTTTTGACGTCCTCTGTGTGGTTAAG

Basic information

species Zea mays
transcript GRMZM2G139894_T02
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G139894_T02 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os11g29380.1 (Oryza sativa), 3'ss of exon 12
gtaacttcagttccatgcatgccatgtagtaccagtgcatggtgttaagaaagatactgaatgcaatcgtccttgatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCATTATTTCACGTTTTGACGTCCTCTGTGTGGTTAAG
|| |  | |  | | |||     ||||  |  ||    || || || || || ||||| |||   ||| |    | | |  ||| ||||||||||| ||||||||||| |||||||| ||| |||||||||| ||||||||||||||||| ||||| ||||| || |||
gtgatgtgatctacttgctcaggatgt--tttcaaacaattgttttgagcaatatacttaattttatcat----gttattgcagATATGATTCATCGAAGACATTCACCCAGAATGTTGAACTGACGGATCCAATTATTTCACGTTTTGATGTCCTTTGTGTTGTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211172446|gb|FL130947.1|FL130947
EST:     CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG                         GTATGATTCATCAAAGACATTCACTCAGAACGTCGAATTGACGGATCCCAT
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: gi|211351173|gb|FL066633.1|FL066633
EST:     CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCNAACCCAGTAGGGGGAAG                         GTATGATTCATCAAAGACATTC
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTC
EST: gi|211174125|gb|FL130962.1|FL130962
EST:     CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG                         GTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: gi|32932509|gb|CF037321.1|CF037321
EST:     CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG                         GTATGATTCATCAAAGACATTCACTCAGAACGTCGAATTGACGGATCCCAT
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: gi|211172448|gb|FL130949.1|FL130949
EST:     CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG                         GTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: gi|33093214|gb|CF053208.1|CF053208
EST:     CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG                         GTATGATTCATCAAAGACATTCACTCAGAACGTCGAATTGACGGATCCCAT
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: gi|211174123|gb|FL130960.1|FL130960
EST:     CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG                         GTATGATTCATC
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATC
EST: gi|211174124|gb|FL130961.1|FL130961
EST:     CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG                         GTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: gi|211172450|gb|FL130951.1|FL130951
EST:     CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG                         GTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: gi|32943927|gb|CF048746.1|CF048746
EST:     CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG                         GTATGATTCATCAAAGACATTCACTCAGAACGTCGAATTGACGGATCCCAT
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: gi|211174121|gb|FL130958.1|FL130958
EST:     CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG                         GTATGATTCATCAAAGACATTCACTCAGAACGTCGAATTGACGGATCCCAT
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: gi|211174118|gb|FL130955.1|FL130955
EST:     CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG                         GTATGATTCATCAAAGACATTCACTCAGAACGTCGAATTGACGGATCCCAT
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: gi|30306555|gb|CD001228.1|CD001228
EST:     CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG                         GTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: gi|211174117|gb|FL130954.1|FL130954
EST:     CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG                         GTATGATTCATCAAAGACATTCACTCAGAACGTCGAATTGACGGATCCCAT
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: gi|29544563|gb|CB604943.1|CB604943
EST:     CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG                         GTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: gi|211174122|gb|FL130959.1|FL130959
EST:     CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG                         GTATGATTCATCAAAGACAT--ACTCAGAATGTCGAATTGACGGATCCCAT
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: gi|211172447|gb|FL130948.1|FL130948
EST:     CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG                         GTATGATTCATCAAAGACATTCACTCAGAACGTCGAATTGACGGATCCCAT
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: gi|18450515|gb|BM428793.1|BM428793
EST:     GTTA-TGCTGCGGCAAACCCAGTAGGGGGAAG                         GTATGATTCATCAAAGACATTCACTCAGAACGTCGAA-TGACGGATCCCAT
genomic: GTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: gi|29544433|gb|CB604813.1|CB604813
EST:     CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG                         GTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACG
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACG
EST: gi|211174120|gb|FL130957.1|FL130957
EST:     CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG                         GTATGATTCATCAAAGACATTCACTCAGAACGTCGAATTGACGGATCCCAT
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: gi|211172449|gb|FL130950.1|FL130950
EST:     CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG                         GTATGATTCATCAAAGACATTCACTCAGAACGTCGAATTGACGGATCCCAT
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taccagtgcatggtgttaagaaagatactgaatgcaatcgtccttgatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCATTATTTCACGTTTTGACGTCCTCTGTGTGGTTAAG
                                         ccttgat  putative branch site (score: 5)
               ttaagaaa  TA-rich tract