1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gttcttttcgccttccctttattcaacctatgtcatagagctctctatcttttttgttgcttacacacacttgaatccttcagGACTTCCAAGAGGGTTGTGGAGCTCCAGTTTTTCTGCTAACCACACAAGTTGGTGGGCTTGGACTTACACTCACCAAGGCAACTCGTGTCATTGTAGTTG
species | Zea mays |
transcript | GRMZM2G138125_T03 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGCGCATTGATGGCACCACCAAGGTTTCTGACCGGGAAAGGATTGTGAAG GACTTCCAAGAGGGTTGTGGAGCTCCAGTTTTTCTGCTAACCACACAAGTTEST: gi|67035224|gb|CO463757.1|CO463757
genomic: TGCGCATTGATGGCACCACCAAGGTTTCTGACCGGGAAAGGATTGTGAAGgttcttttcg ... aatccttcagGACTTCCAAGAGGGTTGTGGAGCTCCAGTTTTTCTGCTAACCACACAAGTT
EST: CGCATTGATGGCACCACCAAGGTTTNCTGACCGGGAAAGGATTGTGAANG GACTTCCNAGAGG-TTGTGGAGCTCCAGTTTTTCTGCTAACCACACAAGTEST: gi|28987103|gb|CB351465.1|CB351465
genomic: CGCATTGATGGCACCACCAAGGTTT-CTGACCGGGAAAGGATTGTGAA-Ggttcttttcg ... aatccttcagGACTTCCAAGAGGGTTGTGGAGCTCCAGTTTTTCTGCTAACCACACAAGT
EST: TGCGCATTGATGGCACCACCAAGGTTTCTGACCGGGAAAGGATTGTGAAG GACTTCCAAGAGGGTTGTGGAGCTCCAGTTTTTCTGCTAACCACACAAGTTEST: gi|94475969|gb|EB704927.1|EB704927
genomic: TGCGCATTGATGGCACCACCAAGGTTTCTGACCGGGAAAGGATTGTGAAGgttcttttcg ... aatccttcagGACTTCCAAGAGGGTTGTGGAGCTCCAGTTTTTCTGCTAACCACACAAGTT
EST: TGCGCATTGATGGCACCACCAAGGTTTCTGACCGGGAAAGGATTGTGAAG GACTTCCAAGAGGGTTGTGGAGCTCCAGTTTTTCTGCTAACCACACAAGTTEST: gi|31909131|gb|CD650765.1|CD650765
genomic: TGCGCATTGATGGCACCACCAAGGTTTCTGACCGGGAAAGGATTGTGAAGgttcttttcg ... aatccttcagGACTTCCAAGAGGGTTGTGGAGCTCCAGTTTTTCTGCTAACCACACAAGTT
EST: TGCGCATTGATGGCACCACCAAGGTTTCTGACCGGGAAAGGATTGTGAAG GACTTCCAAGAGGGTTGTGGAGCTCCAGTTTTTCTGCTAACCACACAAGTTEST: gi|28930971|gb|CB334332.1|CB334332
genomic: TGCGCATTGATGGCACCACCAAGGTTTCTGACCGGGAAAGGATTGTGAAGgttcttttcg ... aatccttcagGACTTCCAAGAGGGTTGTGGAGCTCCAGTTTTTCTGCTAACCACACAAGTT
EST: TGCGCATTGATGGCACCACCAAGGTTTCTGACCGGGAAAGGATTGTGAAG GACTTCCAAGAGGGTTGTGGAGCTCCAGTTTTTCTGCTAACCACACAAGTT
genomic: TGCGCATTGATGGCACCACCAAGGTTTCTGACCGGGAAAGGATTGTGAAGgttcttttcg ... aatccttcagGACTTCCAAGAGGGTTGTGGAGCTCCAGTTTTTCTGCTAACCACACAAGTT
tatgtcatagagctctctatcttttttgttgcttacacacacttgaatccttcagGACTTCCAAGAGGGTTGTGGAGCTCCAGTTTTTCTGCTAACCACACAAGTTGGTGGGCTTGGACTTACACTCACCAAGGCAACTCGTGTCATTGTAGTTG
tgcttac putative branch site (score: 227)
tccttc putative PPT
tatctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcttttcgccttccctttattcaacctatgtcatagagctctctatcttttttgttgcttacacacacttgaatccttcagGACTTCCAAGAGGGTTGTGGAGCTCCAGTTTTTCTGCTAACCACACAAGTTGGTGGGCTTGGACTTACACTCACCAAGGCAACTCGTGTCATTGTAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG