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gtaggataaaagtgtgtttcacgttttgtcatttttttatagatattagctattgctttatacatactagctacttttttgtacgtattatctaaatgtgctaaatagacaaaacctacttgtttccagttctaatgccatgtctgaacaatattgtatttttaaaaaaaatttatgtatatagGGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCAGCAAACAAGAACACAGTTCCTGGTGATGTTTCAGCTATGGTGCCAGGAG
species | Zea mays |
transcript | GRMZM2G135283_T03 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAG GGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCAEST: gi|148973318|gb|EE024403.2|EE024403
genomic: GGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAGgtaggataaa ... atgtatatagGGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCA
EST: TTTCTGGTGGGACTGACAACCATTTAGTTTTGGTGAATCTCAAGAATAAG GGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCAEST: gi|67042253|gb|CO468508.1|CO468508
genomic: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAGgtaggataaa ... atgtatatagGGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCA
EST: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAG GGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCAEST: gi|6194529|gb|AW146633.1|AW146633
genomic: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAGgtaggataaa ... atgtatatagGGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCA
EST: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAG GGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCAEST: gi|60352787|gb|DN219760.1|DN219760
genomic: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAGgtaggataaa ... atgtatatagGGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCA
EST: TTCTGGTGGGAATGACAAACCATTTAGTTCTGGTGAATCTCAAGAATAAG GGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCAEST: gi|60344488|gb|DN211461.1|DN211461
genomic: CTCTGGTGGGACTGAC-AACCATTTAGTTCTGGTGAATCTCAAGAATAAGgtaggataaa ... atgtatatagGGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCA
EST: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAG GGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCAEST: gi|108953686|gb|EC364842.1|EC364842
genomic: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAGgtaggataaa ... atgtatatagGGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCA
EST: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAG GGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCAEST: gi|71299009|gb|DR785497.1|DR785497
genomic: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAGgtaggataaa ... atgtatatagGGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCA
EST: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAG GGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCAEST: gi|60354435|gb|DN221408.1|DN221408
genomic: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAGgtaggataaa ... atgtatatagGGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCA
EST: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAG GGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCAEST: gi|60343439|gb|DN210412.1|DN210412
genomic: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAGgtaggataaa ... atgtatatagGGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCA
EST: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAG GGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCAEST: gi|40336482|gb|CK370552.1|CK370552
genomic: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAGgtaggataaa ... atgtatatagGGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCA
EST: TCTCCGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAG GGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCAEST: gi|113700941|gb|EE678445.1|EE678445
genomic: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAGgtaggataaa ... atgtatatagGGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCA
EST: TCTCCGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAG GGGATAGATGGTTCAAGGGTGGAGAAGGTTTTATAAAGTGTGCATATTGCAEST: gi|6102053|gb|AW126523.1|AW126523
genomic: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAGgtaggataaa ... atgtatatagGGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCA
EST: TCTCCGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAG GGGATAGATGGTTCAAGGGTGGAGAAGGTTTTATAAAGTGTGCATATTGCAEST: gi|67013913|gb|CO442662.1|CO442662
genomic: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAGgtaggataaa ... atgtatatagGGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCA
EST: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAG GGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCAEST: gi|37393418|gb|CF633973.1|CF633973
genomic: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAGgtaggataaa ... atgtatatagGGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCA
EST: TCTCCGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAG GGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCAEST: gi|60397906|gb|DN230722.1|DN230722
genomic: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAGgtaggataaa ... atgtatatagGGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCA
EST: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAG GGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCAEST: gi|14204327|gb|BG838004.1|BG838004
genomic: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAGgtaggataaa ... atgtatatagGGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCA
EST: TCTCCGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAG GGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCAEST: gi|5804699|gb|AI979669.1|AI979669
genomic: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAGgtaggataaa ... atgtatatagGGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCA
EST: TCAAGAATAAG GGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCAEST: gi|67024112|gb|CO452861.1|CO452861
genomic: TCAAGAATAAGgtaggataaa ... atgtatatagGGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCA
EST: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAG GGGATAGATGGTTCAAGGGTGGAGAAAGGTTT-ANAAAGTGTGCATATTGCEST: gi|148945830|gb|EC891119.2|EC891119
genomic: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAGgtaggataaa ... atgtatatagGGGATAGATGGTTCAAGGGTGGAGAA-GGTTTTAGAAAGTGTGCATATTGC
EST: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGATTCTCAAGAATAAG GGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCAEST: gi|60357206|gb|DN224179.1|DN224179
genomic: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAGgtaggataaa ... atgtatatagGGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCA
EST: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAG GGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCAEST: gi|89249961|gb|DY621747.1|DY621747
genomic: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAGgtaggataaa ... atgtatatagGGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCA
EST: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAG GGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCAEST: gi|60353152|gb|DN220125.1|DN220125
genomic: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAGgtaggataaa ... atgtatatagGGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCA
EST: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAG GGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCAEST: gi|60349820|gb|DN216793.1|DN216793
genomic: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAGgtaggataaa ... atgtatatagGGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCA
EST: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAG GGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCA
genomic: TCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAGgtaggataaa ... atgtatatagGGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCA
ttctaatgccatgtctgaacaatattgtatttttaaaaaaaatttatgtatatagGGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCAGCAAACAAGAACACAGTTCCTGGTGATGTTTCAGCTATGGTGCCAGGAG
ttctaat putative branch site (score: 2)
tgaacaatattgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggataaaagtgtgtttcacgttttgtcatttttttatagatattagctattgctttatacatactagctacttttttgtacgtattatctaaatgtgctaaatagacaaaacctacttgtttccagttctaatgccatgtctgaacaatattgtatttttaaaaaaaatttatgtatatagGGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCAGCAAACAAGAACACAGTTCCTGGTGATGTTTCAGCTATGGTGCCAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
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