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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactatagtacatttcattgagagcttccatcttgggtaagagttgtactaacccctcttcgtcctcctgttcgaaagGCATATGAAGGGATGATAGTTGGTGAGCACTCACGTGACAGTGATCTTGAG

Basic information

species Zea mays
transcript GRMZM2G128688_T02
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128688_T01 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os01g54910.1 (Oryza sativa), 3'ss of exon 15
------gtaactatagtacatttcattgagagcttccatcttgg-gtaagagttgtactaacccctctt-cgtcctcctgttcgaaagGCATATGAAGGGATGATAGTTGGTGAGCACTCACGTGACAGTGATCTTGAG
        |  |||      | | | |  || || ||||||  | ||| | | | | || |  |||||| | | ||||| |    ||||| || ||||| ||||| ||||| |||||||||||||||||||||||||| 
gtatcgacatttattcattttgttactatgatctaccatctaagagtagggggtttccttattcctctttctttctcctttctttaagGCGTACGAAGGCATGATTGTTGGAGAGCACTCACGTGACAGTGATCTTGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71428851|gb|DR809901.1|DR809901
EST:     TTATGAGTTTAGAAGCTCGTGGGATCCTCTTTGTATCCCCTGGAATGGAG                         GCATATGAAGGGATGATAGTTGGTGAGCACTCACGTGACAGTGATCTTGAG
genomic: TTATGAGTTTAGAAGCTCGTGGGATCCTCTTTGTATCCCCTGGAATGGAGgtaactatag ... tgttcgaaagGCATATGAAGGGATGATAGTTGGTGAGCACTCACGTGACAGTGATCTTGAG
EST: gi|32936632|gb|CF041451.1|CF041451
EST:     TATGAGTTTAGAAGCTCGTGGGATCCTCTTTGGTATCCCCTGGAATGGAG                         GCATATGAAGGGATGATAGTTGGTGAGCACTCACGTGACAGTGATCTTGAG
genomic: TATGAGTTTAGAAGCTCGTGGGATCCTCTTTG-TATCCCCTGGAATGGAGgtaactatag ... tgttcgaaagGCATATGAAGGGATGATAGTTGGTGAGCACTCACGTGACAGTGATCTTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttccatcttgggtaagagttgtactaacccctcttcgtcctcctgttcgaaagGCATATGAAGGGATGATAGTTGGTGAGCACTCACGTGACAGTGATCTTGAG
                       tactaac  putative branch site (score: 0)
                             cccctcttcgtcctcc  CT-rich tract