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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcatccggttattttgcaagttgttaccgttttgaaaagcgctgcgtttgtatttccgcgttattggggaatatcgtgaatgcttacttcgcaggtcgtggagaagACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTGAGGTACTACGCGAACCAGGCGCTGCAGGCGTGCGATCAAATGATGGTGT

Basic information

species Zea mays
transcript GRMZM2G122135_T04
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7119143|gb|AW497500.1|AW497500
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         ACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaagACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
EST: gi|16926819|gb|BM079887.1|BM079887
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         ACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaagACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
EST: gi|4967137|gb|AI691859.1|AI691859
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         ACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaagACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
EST: gi|17930061|gb|BM267021.1|BM267021
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|17930061|gb|BM267021.1|BM267021
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|17930061|gb|BM267021.1|BM267021
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|17930061|gb|BM267021.1|BM267021
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|17930061|gb|BM267021.1|BM267021
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|17930061|gb|BM267021.1|BM267021
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|17930061|gb|BM267021.1|BM267021
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|17930061|gb|BM267021.1|BM267021
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|16919855|gb|BM074388.1|BM074388
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         ACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaagACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
EST: gi|40336631|gb|CK370701.1|CK370701
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|40336631|gb|CK370701.1|CK370701
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|40336631|gb|CK370701.1|CK370701
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|40336631|gb|CK370701.1|CK370701
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|40336631|gb|CK370701.1|CK370701
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|40336631|gb|CK370701.1|CK370701
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|40336631|gb|CK370701.1|CK370701
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|40336631|gb|CK370701.1|CK370701
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|50339641|gb|CO534767.1|CO534767
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         ACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaagACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
EST: gi|32802094|gb|CD954330.1|CD954330
EST:     GATCCTCGATCAATCT                         ACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
genomic: GATCCTCGATCAATCTgtgagttcat ... cgtggagaagACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
EST: gi|60343317|gb|DN210290.1|DN210290
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|60343317|gb|DN210290.1|DN210290
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|60343317|gb|DN210290.1|DN210290
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|60343317|gb|DN210290.1|DN210290
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|60343317|gb|DN210290.1|DN210290
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|60343317|gb|DN210290.1|DN210290
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|60343317|gb|DN210290.1|DN210290
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|60343317|gb|DN210290.1|DN210290
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|29947616|gb|CB816748.1|CB816748
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|29947616|gb|CB816748.1|CB816748
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|29947616|gb|CB816748.1|CB816748
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|29947616|gb|CB816748.1|CB816748
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|29947616|gb|CB816748.1|CB816748
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|29947616|gb|CB816748.1|CB816748
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|29947616|gb|CB816748.1|CB816748
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|29947616|gb|CB816748.1|CB816748
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|78543701|gb|DV621199.1|DV621199
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         ACCGTGAAACCATGCCTTGTTGAGTTCAGCGAGGACCCTGACGTCGATGTG
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaagACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
EST: gi|60352636|gb|DN219609.1|DN219609
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         ACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaagACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
EST: gi|18167158|gb|BM336997.1|BM336997
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|18167158|gb|BM336997.1|BM336997
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|18167158|gb|BM336997.1|BM336997
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|18167158|gb|BM336997.1|BM336997
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|18167158|gb|BM336997.1|BM336997
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|18167158|gb|BM336997.1|BM336997
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|18167158|gb|BM336997.1|BM336997
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|18167158|gb|BM336997.1|BM336997
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|37388540|gb|CF631479.1|CF631479
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|37388540|gb|CF631479.1|CF631479
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|37388540|gb|CF631479.1|CF631479
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|37388540|gb|CF631479.1|CF631479
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|37388540|gb|CF631479.1|CF631479
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|37388540|gb|CF631479.1|CF631479
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|37388540|gb|CF631479.1|CF631479
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|37388540|gb|CF631479.1|CF631479
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|21395199|gb|BQ539629.1|BQ539629
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         ACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaagACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
EST: gi|5607926|gb|AI901593.1|AI901593
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         ACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaagACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
EST: gi|5714248|gb|AI944233.1|AI944233
EST:     TCAACGTTGCAAAAGTACTACAGTCACTTGTACCGATCCTCGATCAATCT                         ACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaagACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
EST: gi|16926507|gb|BM079570.1|BM079570
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         ACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaagACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
EST: gi|78119292|gb|DV537676.1|DV537676
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         ACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaagACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
EST: gi|5847127|gb|AW000206.1|AW000206
EST:     TCAACGTTGCAAAAGTACTACAGTCACTTGTACCGATCCTCGATCAATCT                         ACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaagACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
EST: gi|6022239|gb|AW067167.1|AW067167
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         ACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaagACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
EST: gi|5525452|gb|AI861345.1|AI861345
EST:     TCAACGTTGCAAAAGTACTACAGTCACTTGTACCGATCCTCGATCAATCT                         ACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaagACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
EST: gi|78025113|gb|DV493500.1|DV493500
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|78025113|gb|DV493500.1|DV493500
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|78025113|gb|DV493500.1|DV493500
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|78025113|gb|DV493500.1|DV493500
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|78025113|gb|DV493500.1|DV493500
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|78025113|gb|DV493500.1|DV493500
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|78025113|gb|DV493500.1|DV493500
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|78025113|gb|DV493500.1|DV493500
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|16925569|gb|BM078637.1|BM078637
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         ACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaagACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
EST: gi|37393714|gb|CF634122.1|CF634122
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|37393714|gb|CF634122.1|CF634122
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|37393714|gb|CF634122.1|CF634122
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|37393714|gb|CF634122.1|CF634122
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|37393714|gb|CF634122.1|CF634122
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|37393714|gb|CF634122.1|CF634122
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|37393714|gb|CF634122.1|CF634122
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|37393714|gb|CF634122.1|CF634122
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         G
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaag-
EST: gi|17931830|gb|BM268790.1|BM268790
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|17931830|gb|BM268790.1|BM268790
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|17931830|gb|BM268790.1|BM268790
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|17931830|gb|BM268790.1|BM268790
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|17931830|gb|BM268790.1|BM268790
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|17931830|gb|BM268790.1|BM268790
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|17931830|gb|BM268790.1|BM268790
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|17931830|gb|BM268790.1|BM268790
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTGTCGT                     
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAA----TC-Tgtgagttcat ... cgtgga
EST: gi|78022431|gb|DV490818.1|DV490818
EST:     TCAACGTTGCAAAAGTACTACAGTCACTTGTACCGATCCTCGATCAATCT                         ACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... cgtggagaagACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttccgcgttattggggaatatcgtgaatgcttacttcgcaggtcgtggagaagACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTGAGGTACTACGCGAACCAGGCGCTGCAGGCGTGCGATCAAATGATGGTGT
                             tgcttac  putative branch site (score: 2)
         ttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagttcatccggttattttgcaagttgttaccgttttgaaaagcgctgcgtttgtatttccgcgttattggggaatatcgtgaatgcttacttcgcaggtcgtggagaagACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTGAGGTACTACGCGAACCAGGCGCTGCAGGCGTGCGATCAAATGATGGTGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG