1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgagttcatccggttattttgcaagttgttaccgttttgaaaagcgctgcgtttgtatttccgcgttattggggaatatcgtgaatgcttacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTGAGGTACTACGCGAACCAGGCGCTGCAGGCGTGCGATC
species | Zea mays |
transcript | GRMZM2G122135_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TCAACGTTGCAAAAGTACTACAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|18169928|gb|BM339768.1|BM339768
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|16377717|gb|BI992076.1|BI992076
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGEST: gi|5499176|gb|AI855043.1|AI855043
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGG
EST: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|22549241|gb|BU101442.1|BU101442
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|18163119|gb|BM332958.1|BM332958
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|5018372|gb|AI714565.1|AI714565
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGGGCTCAGCGAGGACCCTEST: gi|84977249|gb|DW475671.1|DW475671
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTACAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|29545063|gb|CB605241.1|CB605241
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|13126315|gb|BG316885.1|BG316885
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTAGAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|5740565|gb|AI948255.1|AI948255
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTAAAGTCCCTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|18172136|gb|BM347524.1|BM347524
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|21891388|gb|BQ744601.1|BQ744601
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTAAAGTCCCTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|32848539|gb|CD988220.1|CD988220
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: ACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|31362520|gb|CD446877.1|CD446877
genomic: ACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTACAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|37393714|gb|CF634122.1|CF634122
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|29947616|gb|CB816748.1|CB816748
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|17931830|gb|BM268790.1|BM268790
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|18173255|gb|BM348643.1|BM348643
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|60352636|gb|DN219609.1|DN219609
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT -------A-----CCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|24763713|gb|CA398884.1|CA398884
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTACAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|32801988|gb|CD954224.1|CD954224
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: GATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|16922583|gb|BM075638.1|BM075638
genomic: GATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|60343317|gb|DN210290.1|DN210290
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|20803005|gb|BQ294055.1|BQ294055
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|17930245|gb|BM267205.1|BM267205
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|17930061|gb|BM267021.1|BM267021
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|37387213|gb|CF630799.1|CF630799
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|40336631|gb|CK370701.1|CK370701
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|18169253|gb|BM339093.1|BM339093
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|18164243|gb|BM334082.1|BM334082
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|211206778|gb|FL154154.1|FL154154
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTACAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|18167158|gb|BM336997.1|BM336997
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|37388540|gb|CF631479.1|CF631479
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|78025113|gb|DV493500.1|DV493500
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|78119292|gb|DV537676.1|DV537676
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT -------A-----CCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|6056718|gb|AW091123.1|AW091123
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTACAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|24766051|gb|CA401209.1|CA401209
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTACAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|60349044|gb|DN216017.1|DN216017
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|31362029|gb|CD446386.1|CD446386
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTACAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTEST: gi|18175671|gb|BM350900.1|BM350900
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
cgctgcgtttgtatttccgcgttattggggaatatcgtgaatgcttacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTGAGGTACTACGCGAACCAGGCGCTGCAGGCGTGCGATC
tgcttac putative branch site (score: 2)
cttacttc CT-rich tract
tttgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttcatccggttattttgcaagttgttaccgttttgaaaagcgctgcgtttgtatttccgcgttattggggaatatcgtgaatgcttacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCTGACGTCGATGTGAGGTACTACGCGAACCAGGCGCTGCAGGCGTGCGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG