1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaatgactgtcagctatcttagtactggcacatcatcataagcaaaattaaccttgtaatcttccggtaaaaagttttgatgagattgggatctgacatgcatggcagGAAGTACAAAGATCAGATCAAATTTAGGAACAACATCTGGCTATTCAGTTACAAGACTTGGCTTGGGCTTAGTTCCAGCTGCTTGTTCGCTGCTTTCAGC
species | Zea mays |
transcript | GRMZM2G121458_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGACAAAGTTTCATGTGGAATAGCTCTCTATGTTCTCGAGTCCTATCAAG GAAGTACAAAGATCAGATCAAATTTAGGAACAACATCTGGCTATTCAGTTAEST: gi|16378537|gb|BI992477.1|BI992477
genomic: TGACAAAGTTTCATGTGGAATAGCTCTCTATGTTCTCGAGTCCTATCAAGgtaatgactg ... tgcatggcagGAAGTACAAAGATCAGATCAAATTTAGGAACAACATCTGGCTATTCAGTTA
EST: TGACAAAGTTTCATGTGGAATAGCTCTCTATGTTCTCGAGTCCTATCAAG GAAGTACAAAGATCAGATCAAATTTAGGAACAACATCTGGCTATTCAGTTAEST: gi|74246372|gb|DT654286.1|DT654286
genomic: TGACAAAGTTTCATGTGGAATAGCTCTCTATGTTCTCGAGTCCTATCAAGgtaatgactg ... tgcatggcagGAAGTACAAAGATCAGATCAAATTTAGGAACAACATCTGGCTATTCAGTTA
EST: TGACAAAGTTTCATGTGGAATAGCTCTCTATGTTCTCGAGTCCTATCAAG GAAGTACAAAGATCAGATCAAATTTAGGAACAACATCTGGCTATTCAGTTAEST: gi|13249761|gb|BG360666.1|BG360666
genomic: TGACAAAGTTTCATGTGGAATAGCTCTCTATGTTCTCGAGTCCTATCAAGgtaatgactg ... tgcatggcagGAAGTACAAAGATCAGATCAAATTTAGGAACAACATCTGGCTATTCAGTTA
EST: TGACAAAGTTTCATGTGGAATAGCTCTCTATGTTCTCGAGTCCTATCAAG GAAGTACAAAGATCAGATCAAATTTAGGAACAACATCTGGCTATTCAGTTA
genomic: TGACAAAGTTTCATGTGGAATAGCTCTCTATGTTCTCGAGTCCTATCAAGgtaatgactg ... tgcatggcagGAAGTACAAAGATCAGATCAAATTTAGGAACAACATCTGGCTATTCAGTTA
ttgtaatcttccggtaaaaagttttgatgagattgggatctgacatgcatggcagGAAGTACAAAGATCAGATCAAATTTAGGAACAACATCTGGCTATTCAGTTACAAGACTTGGCTTGGGCTTAGTTCCAGCTGCTTGTTCGCTGCTTTCAGC
atctgac putative branch site (score: 21)
taaaaagttttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgactgtcagctatcttagtactggcacatcatcataagcaaaattaaccttgtaatcttccggtaaaaagttttgatgagattgggatctgacatgcatggcagGAAGTACAAAGATCAGATCAAATTTAGGAACAACATCTGGCTATTCAGTTACAAGACTTGGCTTGGGCTTAGTTCCAGCTGCTTGTTCGCTGCTTTCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT