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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gccataatttcaagattcaatgaatctagttccttgatctactacttgatgttgcaaatatcgatcaaacctgtccatcctaactttgatcccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATACTGATTTCAGTCATAGTGTCATGTTTATCAAAGATCACATCGTTGGCGAC

Basic information

species Zea mays
transcript GRMZM2G117507_T01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G117507_T01 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os05g34540.1 (Oryza sativa), 3'ss of exon 12
gccataatttcaagattcaatgaatctagttcc--ttgatctactacttgatgttgcaaatat-cgatcaaacctgtccatcctaactttgatcccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATACT---GATTTCAGTCATAGTGTCATGTTTATCAAAGATCACATCGTTGGCGAC
    | || |    | | | | |||  |  |||  | |||   ||| |   |    ||| |||    |    ||| ||  |||||| | |  ||   ||||||||||| || || ||||| |||||||||||||| |||||||| |||||||| |   | |  || ||| | |   ||  ||  ||||||| | |  | |      
---gttatcttcttaattactaaatacatatccattcgattggctattctgttgcacaattatgtattttgtcctttctttcctaattcttctctgcttgcagACTGTTGATCTCAGTGTCGATTTGAGTGCTGCCAGTGCTGCTGAAGAATATTAGAGTTCACAATCAAAATCCAATCATTCACAAAGAT-ATAATGCTATTC--

upper sequence: GRMZM2G117507_T01 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os05g23860.1 (Oryza sativa), 3'ss of exon 12
gccataatttcaagattcaatgaatctagttccttgatctactacttgatgttgcaaatatcgatcaaacctgtccatcctaactttgatcccattgca--------gACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATACT-GATTTCA--GTCATAGTGTCAT-GTTTATCAAAGATCACATCGTTGGCGAC
 || ||| ||| | || |||   ||| | |   |||  ||| |  ||| | || ||| |||  ||   |||  |   |||||| | |  || |||||||        | |||| || || ||||| |||||||||||||| ||||| || |||||||| | |||||||    || ||    ||  |||  ||||||| |     ||      
-ccttaaattctaaatccaa---atccattctgttgg-ctattgtttgtt-ttacaattatgtattctacccttt--tcctaattcttttctcattgcactattgcagGCTGTTGATCTCAGTGTTGATTTGAGTGCTGCCAGTGCCGCTGAAGAATATTAGATTTCACAACCAAAGCTCAATCATTTCACAAAGAT-ATGCTTTTTCT---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78022940|gb|DV491327.1|DV491327
EST:     AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|60351459|gb|DN218432.1|DN218432
EST:     AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|5668482|gb|AI931997.1|AI931997
EST:     AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|32930550|gb|CF035362.1|CF035362
EST:     AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|6827485|gb|AW331128.1|AW331128
EST:     AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|211532885|gb|FL034589.1|FL034589
EST:     TTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: TTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|32842698|gb|CD982379.1|CD982379
EST:     AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|32940482|gb|CF045301.1|CF045301
EST:     AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|95108161|gb|EB740390.1|EB740390
EST:     AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|5296179|gb|AI782859.1|AI782859
EST:     AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|211070323|gb|FL464130.1|FL464130
EST:     AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|32932215|gb|CF037027.1|CF037027
EST:     AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|31352817|gb|CD437174.1|CD437174
EST:     AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|5915586|gb|AW053227.1|AW053227
EST:     AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|108953371|gb|EC364705.1|EC364705
EST:     AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|60346246|gb|DN213219.1|DN213219
EST:     AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|211417699|gb|FL464427.1|FL464427
EST:     AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|29946000|gb|CB815928.1|CB815928
EST:     AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|60353508|gb|DN220481.1|DN220481
EST:     AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|6865134|gb|AW360484.1|AW360484
EST:     AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|5791273|gb|AI978065.1|AI978065
EST:     AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|50323202|gb|CO518328.1|CO518328
EST:     AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|5871056|gb|AW017497.1|AW017497
EST:     AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|211532888|gb|FL034592.1|FL034592
EST:     TTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: TTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|13515652|gb|BG517928.1|BG517928
EST:     AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|211532887|gb|FL034591.1|FL034591
EST:     TTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: TTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|32940403|gb|CF045222.1|CF045222
EST:     AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|6056470|gb|AW090860.1|AW090860
EST:     AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|6194638|gb|AW146742.1|AW146742
EST:     AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|21706330|gb|BQ635356.1|BQ635356
EST:     AGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|5901301|gb|AW042401.1|AW042401
EST:     AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|32934162|gb|CF038974.1|CF038974
EST:     AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|32934507|gb|CF039319.1|CF039319
EST:     AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
EST: gi|211280268|gb|FL478208.1|FL478208
EST:     AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAG                         ACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC
genomic: AGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 288

AGCTATGATGCCACCACACATTTTGAGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATACTGATTTCAGTCATAGTGTCATGTTTATCAAAGATCACATCGTTGGCGAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 362

AGCTATGATGCCACCACACATTTTGAGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATACTGATTTCAGTCATAGTGTCATGTTTATCAAAGATCACATCGTTGGCGAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 174

AGCTATGATGCCACCACACATTTTGAGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATACTGATTTCAGTCATAGTGTCATGTTTATCAAAGATCACATCGTTGGCGAC


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 219

AGCTATGATGCCACCACACATTTTGAGACAACTGTAACAGATGTTCTGAACATGTATACAATGATCACCGGAAAGgtaacatgga ... cccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATACTGATTTCAGTCATAGTGTCATGTTTATCAAAGATCACATCGTTGGCGAC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatgttgcaaatatcgatcaaacctgtccatcctaactttgatcccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATACTGATTTCAGTCATAGTGTCATGTTTATCAAAGATCACATCGTTGGCGAC
                                            tcccatt  CT-rich tract
          aaatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gccataatttcaagattcaatgaatctagttccttgatctactacttgatgttgcaaatatcgatcaaacctgtccatcctaactttgatcccattgcagACTGTAGACCTTAGTGTGGATTTGAGTGCTGCTAGTGCTGCCGAAGAATACTGATTTCAGTCATAGTGTCATGTTTATCAAAGATCACATCGTTGGCGAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - -ctacttg
- - - - - - - - - - - - - - - - - - - - - - - - -tgttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatcaaa