1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...acgttacaaatatatgaaccaaacagcaccttagttgttactctttgcctttctgagatagcttattccccctctgtagctaatatcatgattcatgtagGCAAGAAGGTTTATCACTCTTATCGATGAGTTGTACAACCACCACTGCCGCCTTATATGCCTAGCTGCCTCATCCATTGATGATCTTTTTCAAGGAACTG
species | Zea mays |
transcript | GRMZM2G115372_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CAATTTTCATATCAGAAATTCCAGCGATGAGTATGAAGATCCGTGACAAG GCAAGAAGGTTTATCACTCTTATCGATGAGTTGTACAACCACCACTGCCGCEST: gi|78076776|gb|DV505210.1|DV505210
genomic: CAATTTTCATATCAGAAATTCCAGCGATGAGTATGAAGATCCGTGACAAGgtatttcttc ... attcatgtagGCAAGAAGGTTTATCACTCTTATCGATGAGTTGTACAACCACCACTGCCGC
EST: CAATTTTCATATCAGAAATTCCAGCGATGAGTATGAAGATCCGTGACAAG GCAAGAAGGTTTATCACTTTTATCGATGAGTTGTACAACCACCACTGCCGCEST: gi|83278407|gb|DV942415.1|DV942415
genomic: CAATTTTCATATCAGAAATTCCAGCGATGAGTATGAAGATCCGTGACAAGgtatttcttc ... attcatgtagGCAAGAAGGTTTATCACTCTTATCGATGAGTTGTACAACCACCACTGCCGC
EST: CAATTTTCATATCAGAAATTCCAGCGATGAGTATGAAGATCCGTGACAAG GCAAGAAGGTTTATCACTCTTATCGATGAGTTGTACAACCACCACTGCCGC
genomic: CAATTTTCATATCAGAAATTCCAGCGATGAGTATGAAGATCCGTGACAAGgtatttcttc ... attcatgtagGCAAGAAGGTTTATCACTCTTATCGATGAGTTGTACAACCACCACTGCCGC
tgcctttctgagatagcttattccccctctgtagctaatatcatgattcatgtagGCAAGAAGGTTTATCACTCTTATCGATGAGTTGTACAACCACCACTGCCGCCTTATATGCCTAGCTGCCTCATCCATTGATGATCTTTTTCAAGGAACTG
agctaat putative branch site (score: 58)
taatatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acgttacaaatatatgaaccaaacagcaccttagttgttactctttgcctttctgagatagcttattccccctctgtagctaatatcatgattcatgtagGCAAGAAGGTTTATCACTCTTATCGATGAGTTGTACAACCACCACTGCCGCCTTATATGCCTAGCTGCCTCATCCATTGATGATCTTTTTCAAGGAACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - tgaacca
- - - - - - - - - - - -cagcacc
- - - - - - - - - - - - - - - - - -tgttact
- - - - - - - - - - - - - - - - - - - - - - - - -tttctga