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gtagtctgttaccaatgaattcctagcacatgtgaagtacctgtcaagtatctttggttaagcagtcggttcttttttgcatcttcatcagATGGGGCTTCCACAACTGGTAACACTGCATTTCAAGATAAGGGGTTTGATCCTACAGGATGGGAACTCGCCCTTGTTACCGCACCGAGCAACACGACTTC
species | Zea mays |
transcript | GRMZM2G114513_T02 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AATGCTCTTGCCTTGGCTATTGTTCCAACAG ATGGGGCTTCCACAACCGGTAACACTGCATTTCAAGATAAGGGGTTTGATCEST: gi|211478858|gb|FL037619.1|FL037619
genomic: AATGCTCTTGCCTTGGCTATTGTTCCAACAGgtagtctgtt ... tcttcatcagATGGGGCTTCCACAACTGGTAACACTGCATTTCAAGATAAGGGGTTTGATC
EST: AGCTATAGAGGAGAGCAATGCTCTTGCCTTGGCTATTGTTCCAACAG ATGGGGCTTCCACAACTGGTAACACTGCATTTCAAGATAAGGGGTTTGATCEST: gi|14203770|gb|BG837447.1|BG837447
genomic: AGCTATAGAGGAAAGCAATGCTCTTGCCTTGGCTATTGTTCCAACAGgtagtctgtt ... tcttcatcagATGGGGCTTCCACAACTGGTAACACTGCATTTCAAGATAAGGGGTTTGATC
EST: ATCAGCTATAGAGGAAAGCAATGCTCTTGCCTTGGCTATTGTTCCAACAG ATGGGGCTTCCACAACCGGTAACACTGCATTTCAAGATAAGGGGTTTGATC
genomic: ATCAGCTATAGAGGAAAGCAATGCTCTTGCCTTGGCTATTGTTCCAACAGgtagtctgtt ... tcttcatcagATGGGGCTTCCACAACTGGTAACACTGCATTTCAAGATAAGGGGTTTGATC
gtacctgtcaagtatctttggttaagcagtcggttcttttttgcatcttcatcagATGGGGCTTCCACAACTGGTAACACTGCATTTCAAGATAAGGGGTTTGATCCTACAGGATGGGAACTCGCCCTTGTTACCGCACCGAGCAACACGACTTC
ttcttttttgcatctt CT-rich tract
ttctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtctgttaccaatgaattcctagcacatgtgaagtacctgtcaagtatctttggttaagcagtcggttcttttttgcatcttcatcagATGGGGCTTCCACAACTGGTAACACTGCATTTCAAGATAAGGGGTTTGATCCTACAGGATGGGAACTCGCCCTTGTTACCGCACCGAGCAACACGACTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG