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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtatctaccagttctgtaagtttgttttctatcgttgcaacaatatgtccatgtgtaacaacacctttttttttactctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAGTCAGAGCATGCATTCTACCTGGACTGGGCTGTCCACTCTTTCAGGATCA

Basic information

species Zea mays
transcript GRMZM2G112149_T03
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33102527|gb|CF062487.1|CF062487
EST:     CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32923431|gb|CF028243.1|CF028243
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32923437|gb|CF028249.1|CF028249
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32923111|gb|CF027923.1|CF027923
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32928142|gb|CF032954.1|CF032954
EST:     CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|67023444|gb|CO452193.1|CO452193
EST:     CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32846737|gb|CD986418.1|CD986418
EST:     CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32921924|gb|CF026736.1|CF026736
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGACTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32923249|gb|CF028061.1|CF028061
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32923251|gb|CF028063.1|CF028063
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAAGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32920338|gb|CF025150.1|CF025150
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32922289|gb|CF027101.1|CF027101
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32922758|gb|CF027570.1|CF027570
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGACTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32923253|gb|CF028065.1|CF028065
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32920308|gb|CF025120.1|CF025120
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32922374|gb|CF027186.1|CF027186
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32847081|gb|CD986762.1|CD986762
EST:     CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32922467|gb|CF027279.1|CF027279
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32920444|gb|CF025256.1|CF025256
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32922184|gb|CF026996.1|CF026996
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32922607|gb|CF027419.1|CF027419
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32922618|gb|CF027430.1|CF027430
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32922959|gb|CF027771.1|CF027771
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32923075|gb|CF027887.1|CF027887
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32922801|gb|CF027613.1|CF027613
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32850050|gb|CD989731.1|CD989731
EST:     CTCTTGCAATCANAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32922825|gb|CF027637.1|CF027637
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32847544|gb|CD987225.1|CD987225
EST:     CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32923373|gb|CF028185.1|CF028185
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAACTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32920357|gb|CF025169.1|CF025169
EST:     CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32923094|gb|CF027906.1|CF027906
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|1546875|gb|AA054818.1|AA054818
EST:     CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGG
EST: gi|32922892|gb|CF027704.1|CF027704
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32922932|gb|CF027744.1|CF027744
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32922966|gb|CF027778.1|CF027778
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32923171|gb|CF027983.1|CF027983
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32923230|gb|CF028042.1|CF028042
EST:     CTCTTGCAATCAAAAAGGAGGGCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32922490|gb|CF027302.1|CF027302
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGACTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGTAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32850703|gb|CD990384.1|CD990384
EST:     CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32922150|gb|CF026962.1|CF026962
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|33094718|gb|CF054712.1|CF054712
EST:     CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32923009|gb|CF027821.1|CF027821
EST:     CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32850158|gb|CD989839.1|CD989839
EST:     CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32922317|gb|CF027129.1|CF027129
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGGGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32922606|gb|CF027418.1|CF027418
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32922616|gb|CF027428.1|CF027428
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32920412|gb|CF025224.1|CF025224
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32923264|gb|CF028076.1|CF028076
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32922985|gb|CF027797.1|CF027797
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32850624|gb|CD990305.1|CD990305
EST:     CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32846278|gb|CD985959.1|CD985959
EST:     CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32923021|gb|CF027833.1|CF027833
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32923275|gb|CF028087.1|CF028087
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32923113|gb|CF027925.1|CF027925
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32922341|gb|CF027153.1|CF027153
EST:     GCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: GCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32923541|gb|CF028353.1|CF028353
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32922529|gb|CF027341.1|CF027341
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32920361|gb|CF025173.1|CF025173
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|15199045|gb|BI423625.1|BI423625
EST:     CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32846795|gb|CD986476.1|CD986476
EST:     CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32923291|gb|CF028103.1|CF028103
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32922204|gb|CF027016.1|CF027016
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32922116|gb|CF026928.1|CF026928
EST:     CTCTTGCAATCAAAAAGGAGGTCGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
EST: gi|32849099|gb|CD988780.1|CD988780
EST:     CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG
genomic: CTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatct ... ctctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcgttgcaacaatatgtccatgtgtaacaacacctttttttttactctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAGTCAGAGCATGCATTCTACCTGGACTGGGCTGTCCACTCTTTCAGGATCA
                      gtgtaac  putative branch site (score: 3)
                               cacctttttttttact  putative PPT
                                   tttttttttactcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgtatctaccagttctgtaagtttgttttctatcgttgcaacaatatgtccatgtgtaacaacacctttttttttactctttgcagGTGATCCAGATCGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTACGCAAGTCAGAGCATGCATTCTACCTGGACTGGGCTGTCCACTCTTTCAGGATCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA