1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaacttttcaatatacacttaatggatgttgatgtttcattgtactcctctcttaaaacgacatctgggactgggatgcagAACTCGAAGGGCTCCCAATCGAGCTTGTCCATCGGATCGTTCCTGAACACATGAGGAAGTGAACCGGTGGTGGACGTGCTGGAGAGATCCCTGTTTCGTG
species | Zea mays |
transcript | GRMZM2G109624_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CTTGCCAAGTGGACGACCGCTGCCAGCGCTGTTCGACTTCACAGCAGCCG AACTCGAAGGGCTCCCAATCGAGCTTGTCCATCGGATCGTTCCTGAACACAEST: gi|60399462|gb|DN232274.1|DN232274
genomic: CTTGCCAAGTGGACGACCGCTGCCAGCGCTGTTCGACTTCACAGCAGCCGgtaacttttc ... tgggatgcagAACTCGAAGGGCTCCCAATCGAGCTTGTCCATCGGATCGTTCCTGAACACA
EST: CTTGCCAAGTGGACGACCGCTGCCAGCGCTGTTCGACTTCACAGCAGCCG AACTCGAAGGGCTCCCAATCGAGCTTGTCCATCGGATCGTTCCTGAACACAEST: gi|31664051|gb|CD573231.1|CD573231
genomic: CTTGCCAAGTGGACGACCGCTGCCAGCGCTGTTCGACTTCACAGCAGCCGgtaacttttc ... tgggatgcagAACTCGAAGGGCTCCCAATCGAGCTTGTCCATCGGATCGTTCCTGAACACA
EST: CTTGCCAAGTGGACGACCGCTGCCAGCGCTGTTCGACTTCACAGCAGCCG AACTCGAAGGGCTCCCAATCGAGCTTGTCCATCGGATCGTTCCTGAAAACAEST: gi|32944815|gb|CF049634.1|CF049634
genomic: CTTGCCAAGTGGACGACCGCTGCCAGCGCTGTTCGACTTCACAGCAGCCGgtaacttttc ... tgggatgcagAACTCGAAGGGCTCCCAATCGAGCTTGTCCATCGGATCGTTCCTGAACACA
EST: CTTGCCAAGTGGACGACCGCCGCCAGCGCTGTTCGACTTCACAGCAGCCG AACTCGAAGGGCTCCCAATCGAGCTTGTCCATCGGATCGTTCCTGAACACAEST: gi|5607686|gb|AI901353.1|AI901353
genomic: CTTGCCAAGTGGACGACCGCTGCCAGCGCTGTTCGACTTCACAGCAGCCGgtaacttttc ... tgggatgcagAACTCGAAGGGCTCCCAATCGAGCTTGTCCATCGGATCGTTCCTGAACACA
EST: CTTGCCAAGTGGACGACCGCTGCCAGCGCTGTTCGACTTCACAGCAGCCG AACTCGAAGGGCTCCCAATCGAGCTTGTCCATCGGATCGTTCCTGAACACAEST: gi|116824778|gb|EC868424.1|EC868424
genomic: CTTGCCAAGTGGACGACCGCTGCCAGCGCTGTTCGACTTCACAGCAGCCGgtaacttttc ... tgggatgcagAACTCGAAGGGCTCCCAATCGAGCTTGTCCATCGGATCGTTCCTGAACACA
EST: CTTGCCAAGTGGACGACCGCTGCCAGCGCTGTTCGACTTCACAGCAGCCG AACTCGAAGGGCTCCCAATCGAGCTTGTCCATCGGATCGTTCCTGAACACAEST: gi|12973361|gb|BG268442.1|BG268442
genomic: CTTGCCAAGTGGACGACCGCTGCCAGCGCTGTTCGACTTCACAGCAGCCGgtaacttttc ... tgggatgcagAACTCGAAGGGCTCCCAATCGAGCTTGTCCATCGGATCGTTCCTGAACACA
EST: CTTGCCAAGTGGACGACCGCTGCCAGCGCTGTTCGACTTCACAGCAGCCG AACTCGAAGGGCTCCCAATCGAGCTTGTCCATCGGATCGTTCCTGAACACAEST: gi|211466836|gb|FL414153.1|FL414153
genomic: CTTGCCAAGTGGACGACCGCTGCCAGCGCTGTTCGACTTCACAGCAGCCGgtaacttttc ... tgggatgcagAACTCGAAGGGCTCCCAATCGAGCTTGTCCATCGGATCGTTCCTGAACACA
EST: CTTGCCAAGTGGACGACCGCTGCCAGCGCTGTTCGACTTCACAGCAGCCG AACTCGAAGGGCTCCCAATCGAGCTTGTCCATCGGATCGTTCCTGAACACAEST: gi|60354737|gb|DN221710.1|DN221710
genomic: CTTGCCAAGTGGACGACCGCTGCCAGCGCTGTTCGACTTCACAGCAGCCGgtaacttttc ... tgggatgcagAACTCGAAGGGCTCCCAATCGAGCTTGTCCATCGGATCGTTCCTGAACACA
EST: CTTGCCAAGTGGACGACCGCTGCCAGCGCTGTTCGACTTCACAGCAGCCG AACTCGAAGGGCTCCCAATCGAGCTTGTCCATCGGATCGTTCCTGAACACAEST: gi|28983303|gb|BQ538545.2|BQ538545
genomic: CTTGCCAAGTGGACGACCGCTGCCAGCGCTGTTCGACTTCACAGCAGCCGgtaacttttc ... tgggatgcagAACTCGAAGGGCTCCCAATCGAGCTTGTCCATCGGATCGTTCCTGAACACA
EST: TCACAGCAGCCG AACTCGAAGGGCTCCCAATCGAGCTTGTCCATCGGATCGTTCCTGAACACAEST: gi|60338924|gb|DN205897.1|DN205897
genomic: TCACAGCAGCCGgtaacttttc ... tgggatgcagAACTCGAAGGGCTCCCAATCGAGCTTGTCCATCGGATCGTTCCTGAACACA
EST: CTTGCCAAGTGGACGACCGCTGCCAGCGCTGTTCGACTTCACAGCAGCCG AACTCGAAGGGCTCCCAATCGAGCTTGTCCATCGGATCGTTCCTGAACACAEST: gi|21626337|gb|BQ621258.1|BQ621258
genomic: CTTGCCAAGTGGACGACCGCTGCCAGCGCTGTTCGACTTCACAGCAGCCGgtaacttttc ... tgggatgcagAACTCGAAGGGCTCCCAATCGAGCTTGTCCATCGGATCGTTCCTGAACACA
EST: CTTGCCAAGTGGACGACCGCTGCCAGCGCTGTTCGACTTCACAGCAGCCG AACTCGAAGGGCTCCCAATCGAGCTTGTCCATCGGATCGTTCCTGAACACAEST: gi|78025807|gb|DV494194.1|DV494194
genomic: CTTGCCAAGTGGACGACCGCTGCCAGCGCTGTTCGACTTCACAGCAGCCGgtaacttttc ... tgggatgcagAACTCGAAGGGCTCCCAATCGAGCTTGTCCATCGGATCGTTCCTGAACACA
EST: CTTGCCAAGTGGACGACCGCTGCCAGCGCTGTTCGACTTCACAGCAGCCG AACTCGAAGGGCTCCCAATCGAGCTTGTCCATCGGATCGTTCCTGAACACA
genomic: CTTGCCAAGTGGACGACCGCTGCCAGCGCTGTTCGACTTCACAGCAGCCGgtaacttttc ... tgggatgcagAACTCGAAGGGCTCCCAATCGAGCTTGTCCATCGGATCGTTCCTGAACACA
tgttgatgtttcattgtactcctctcttaaaacgacatctgggactgggatgcagAACTCGAAGGGCTCCCAATCGAGCTTGTCCATCGGATCGTTCCTGAACACATGAGGAAGTGAACCGGTGGTGGACGTGCTGGAGAGATCCCTGTTTCGTG
tgttgat putative branch site (score: 38)
tcttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacttttcaatatacacttaatggatgttgatgtttcattgtactcctctcttaaaacgacatctgggactgggatgcagAACTCGAAGGGCTCCCAATCGAGCTTGTCCATCGGATCGTTCCTGAACACATGAGGAAGTGAACCGGTGGTGGACGTGCTGGAGAGATCCCTGTTTCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC