1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...ttgttgtaccttttgccacctcattgtgaatgtggatacatgttgaatgactggttaatatttgatctaatgttgagggtgtgttcttctatccatgcagATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCA
species | Zea mays |
transcript | GRMZM2G108829_T02 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAG ATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAEST: gi|32871065|gb|CF010747.1|CF010747
genomic: GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAGgtcaatattc ... atccatgcagATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCA
EST: GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAG ATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGC-ATGCAEST: gi|32932540|gb|CF037352.1|CF037352
genomic: GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAGgtcaatattc ... atccatgcagATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCA
EST: GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAG ATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAEST: gi|71304777|gb|DR788504.1|DR788504
genomic: GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAGgtcaatattc ... atccatgcagATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCA
EST: GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAG ATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAEST: gi|211496287|gb|FL041699.1|FL041699
genomic: GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAGgtcaatattc ... atccatgcagATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCA
EST: GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAG ATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAEST: gi|31350422|gb|CD434779.1|CD434779
genomic: GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAGgtcaatattc ... atccatgcagATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCA
EST: GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAG ATCAAAGGCAGTCAACTGGCCGAGGTGATGACCACAGCCAGTAGCGATGCAEST: gi|32870331|gb|CF010013.1|CF010013
genomic: GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAGgtcaatattc ... atccatgcagATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCA
EST: GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAG ATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAEST: gi|32869779|gb|CF009461.1|CF009461
genomic: GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAGgtcaatattc ... atccatgcagATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCA
EST: GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAG ATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAEST: gi|67011156|gb|CO439905.1|CO439905
genomic: GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAGgtcaatattc ... atccatgcagATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCA
EST: GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAG ATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAEST: gi|5932684|gb|AW057045.1|AW057045
genomic: GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAGgtcaatattc ... atccatgcagATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCA
EST: GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAG ATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCA
genomic: GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAGgtcaatattc ... atccatgcagATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCA
aatgactggttaatatttgatctaatgttgagggtgtgttcttctatccatgcagATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCA
atctaat putative branch site (score: 3)
ttcttctatcc putative PPT
ttaatatttgatctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttgtaccttttgccacctcattgtgaatgtggatacatgttgaatgactggttaatatttgatctaatgttgagggtgtgttcttctatccatgcagATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCA
-tgttgta
- - - - - - - -ccacctc
- - - - - - - - - - - - -gtgaatg
- - - - - - - - - - - - - - - - - -atacatg
- - - - - - - - - - - - - - - - - - - -atgttga
- - - - - - - - - - - - - - - - - - - - - ttgaatg