1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gtctttctatgcatactaggaaaatcttgtgccagttgatcctgcattatatatataagtggtatttgctaattttgacccatttgcgatgcctccgcagCGTGAGCTAACAAAGAAGCAAATAGAGAAATTGAAAAATCAAAGGGAGAAGCTCGAATCCCTGTGTCGAACACTACAGGCAGAAAGGAAACAAGGCCCCT
species | Zea mays |
transcript | GRMZM2G107731_T02 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AGGGAAAATGTGAGAACTCAGATATTGCTATTGTGAAGCTCATTGAAGAG CGTGAGCTAACAAAGAAGCAAATAGAGAAATTGAAAAATCAAAGGGAGAAGEST: gi|149071350|gb|EE159745.2|EE159745
genomic: AGGGAAAATGTGAGAACTCAGATATTGCTATTGTGAAGCTCATTGAAGAGgtaatgtgtg ... gcctccgcagCGTGAGCTAACAAAGAAGCAAATAGAGAAATTGAAAAATCAAAGGGAGAAG
EST: AGGGAGAATGTGAGAACTCAGATATTGCTATTGTGAAGCTCATTGAAGAG CGTGAGCTAACAAAGAAGCAAATAGAGAAATTGAAAAATCAAAGGGAGAAGEST: gi|71758247|gb|DR956184.1|DR956184
genomic: AGGGAAAATGTGAGAACTCAGATATTGCTATTGTGAAGCTCATTGAAGAGgtaatgtgtg ... gcctccgcagCGTGAGCTAACAAAGAAGCAAATAGAGAAATTGAAAAATCAAAGGGAGAAG
EST: AGGGAAAATGTGAGAACTCAGATATTGCTATTGTGAAGCTCATTGAAGAG CGTGAGCTAACAAAGAAGCAAATAGAGAAATTGAAAAATCAAAGGGAGAAGEST: gi|148937206|gb|EC881387.2|EC881387
genomic: AGGGAAAATGTGAGAACTCAGATATTGCTATTGTGAAGCTCATTGAAGAGgtaatgtgtg ... gcctccgcagCGTGAGCTAACAAAGAAGCAAATAGAGAAATTGAAAAATCAAAGGGAGAAG
EST: AGGGAAAATGTGAGAACTCAGATATTGCTATTGTGAAGCTCATTGAAGAG CGTGAGCTAACAAAGAAGCAAATAGAGAAATTGAAAAATCAAAGGGAGAAGEST: gi|78022706|gb|DV491093.1|DV491093
genomic: AGGGAAAATGTGAGAACTCAGATATTGCTATTGTGAAGCTCATTGAAGAGgtaatgtgtg ... gcctccgcagCGTGAGCTAACAAAGAAGCAAATAGAGAAATTGAAAAATCAAAGGGAGAAG
EST: AGGGAAAATGCGAGAATTCAGATATTGCTATTGTGAAGCTCATTGAAGAG CGTGAGCTAACAAAGAAGCAAATAGAGAAATTGAAAAATCAAAAGGAGAAGEST: gi|37394977|gb|CF634768.1|CF634768
genomic: AGGGAAAATGTGAGAACTCAGATATTGCTATTGTGAAGCTCATTGAAGAGgtaatgtgtg ... gcctccgcagCGTGAGCTAACAAAGAAGCAAATAGAGAAATTGAAAAATCAAAGGGAGAAG
EST: AGGGAAAATGCGAGAATTCAGATATTGCTATTGTGAAGCTCATTGAAGAG CGTGAGCTAACAAAGAAGCAAATAGAGAAATTGAAAAATCAAAAGGAGAAGEST: gi|213169996|gb|FM189145.1|FM189145
genomic: AGGGAAAATGTGAGAACTCAGATATTGCTATTGTGAAGCTCATTGAAGAGgtaatgtgtg ... gcctccgcagCGTGAGCTAACAAAGAAGCAAATAGAGAAATTGAAAAATCAAAGGGAGAAG
EST: AGGGAAAATGCGAGAATTCAGATATTGCTATTGTGAAGCTCATTGAAGAG CGTGAGCTAACAAAGAAGCAAATAGAGAAATTGAAAEST: gi|71774541|gb|DR972419.1|DR972419
genomic: AGGGAAAATGTGAGAACTCAGATATTGCTATTGTGAAGCTCATTGAAGAGgtaatgtgtg ... gcctccgcagCGTGAGCTAACAAAGAAGCAAATAGAGAAATTGAAA
EST: AGGGAAAATGTGAGAACTCAGATATTGCTATTGTGAAGCTCATTGAAGAG CGTGAGCTAACAAAGAAGCAAATAGAGAAATTGAAAAATCAAAGGGAGAAGEST: gi|32931571|gb|CF036383.1|CF036383
genomic: AGGGAAAATGTGAGAACTCAGATATTGCTATTGTGAAGCTCATTGAAGAGgtaatgtgtg ... gcctccgcagCGTGAGCTAACAAAGAAGCAAATAGAGAAATTGAAAAATCAAAGGGAGAAG
EST: AGGGAAAATGCGAGAATTCAGATATTGCTATTGTGAAGCTCATTGAAGAG CGTGAGCTAACAAAGEST: gi|94473572|gb|EB702530.1|EB702530
genomic: AGGGAAAATGTGAGAACTCAGATATTGCTATTGTGAAGCTCATTGAAGAGgtaatgtgtg ... gcctccgcagCGTGAGCTAACAAAG
EST: AGGGAAAATGTGAGAACTCAGATATTGCTATTGTGAAGCTCATTGAAGAG CGTGAGCTACCAAAGAAGCAAATAGAGAAATTGAAAAATCAAAGGGAGAAGEST: gi|78114092|gb|DV532481.1|DV532481
genomic: AGGGAAAATGTGAGAACTCAGATATTGCTATTGTGAAGCTCATTGAAGAGgtaatgtgtg ... gcctccgcagCGTGAGCTAACAAAGAAGCAAATAGAGAAATTGAAAAATCAAAGGGAGAAG
EST: AGGGAAAATGTGAGAACTCAGATATTGCTATTGTGAAGCTCATTGAAGAG CGTGAGCTAACAAAGAAGCAAATAGAGAAATTGAAAAATCAAAGGGAGAAGEST: gi|60337106|gb|DN204079.1|DN204079
genomic: AGGGAAAATGTGAGAACTCAGATATTGCTATTGTGAAGCTCATTGAAGAGgtaatgtgtg ... gcctccgcagCGTGAGCTAACAAAGAAGCAAATAGAGAAATTGAAAAATCAAAGGGAGAAG
EST: AGGGAAAATGCGAGAATTCAGATATTGCTATTGTGAAGCTCATTGAAGAG CGTGAGCTAACAAAGAAGCAAATAGAGAAATTGAAAAATCAAAAGGAGAAG
genomic: AGGGAAAATGTGAGAACTCAGATATTGCTATTGTGAAGCTCATTGAAGAGgtaatgtgtg ... gcctccgcagCGTGAGCTAACAAAGAAGCAAATAGAGAAATTGAAAAATCAAAGGGAGAAG
attatatatataagtggtatttgctaattttgacccatttgcgatgcctccgcagCGTGAGCTAACAAAGAAGCAAATAGAGAAATTGAAAAATCAAAGGGAGAAGCTCGAATCCCTGTGTCGAACACTACAGGCAGAAAGGAAACAAGGCCCCT
tgcctcc CT-rich tract
tatttgctaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctttctatgcatactaggaaaatcttgtgccagttgatcctgcattatatatataagtggtatttgctaattttgacccatttgcgatgcctccgcagCGTGAGCTAACAAAGAAGCAAATAGAGAAATTGAAAAATCAAAGGGAGAAGCTCGAATCCCTGTGTCGAACACTACAGGCAGAAAGGAAACAAGGCCCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA