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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactaatttttttaccactttatagatttatcattttactttctagtttgtaccattcattttttttttctctagaaggaaattatctctgcacttgatcatttaaacttctattggttatccaatttagtttttgaatgataaaacattacatatggatattattgcagGCTGATGTAGCTTGGAAGTTCTTAAATATAATGAGAACCTACTTGGAATCACTTTGCTCTGACCTGCGCTTTCATACCATTACAAATGTACAGTCAAATA

Basic information

species Zea mays
transcript GRMZM2G107651_T01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107651_T01 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os03g05200.1 (Oryza sativa), 3'ss of exon 15
---gtactaatttttttaccactttatagatttatcattttactttctagtttgtaccattcattttttttttctctagaaggaaattat------ctctgcacttgatcatttaaacttctattggttatccaatttagtttttga--atgataaaacattaca-----tatggatattattgcagGCTGATGTAGCTTGGAAGTTCTTAAATATAATGAGAACCTACTTGGAATCACTTTGCTCTGACCTGCGCTTTCATACCATTACAAATGTACAGTCAAATA
   ||| || | ||| ||  | ||   | |   |||| |    |||   |  ||| || ||   |||||   | |  |||     || ||      ||      |   |||| | |  || |||||       ||  | | |    |   |    |   ||||||     | ||||| | ||| |||||||| | ||||||| ||||||| ||  | |||||| ||||  |||| || ||||| ||||||||||  | ||||||||| || ||||||||||||||||
gtagtaatattatttataaaatttggaatagggatcaatcctgtttggtgcctgttcccttggatttttccctttgcagatcttgatcatgtaaaacttgttgatccttcatgttagattttattgaaggataaagatggctcgaaatatttcccatgtattacaactagtttggatttcattacagGCTGAGGCAGCTTGGCAGTTCTTGAACGTCATGAGATCCTATCTGGAGTCGCTTTGTTCTGACCTGCCATCTCATACCATCACCAATGTACAGTCAAATA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32823540|gb|CD963262.1|CD963262
EST:     AGAATTCTTTGGCTAAGAGACATCCCATCTATAAATGCAATGAAGTTCAG                         GCTGATGTAGCTTGGAAGTTCTTA
genomic: AGAATTCTTTGGCTAAGAGACATCCCATCTATAAATGCAATGAAGTTCAGgtactaattt ... attattgcagGCTGATGTAGCTTGGAAGTTCTTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttatccaatttagtttttgaatgataaaacattacatatggatattattgcagGCTGATGTAGCTTGGAAGTTCTTAAATATAATGAGAACCTACTTGGAATCACTTTGCTCTGACCTGCGCTTTCATACCATTACAAATGTACAGTCAAATA
        aatttagtttttgaat  TA-rich tract