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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtggttcccatatctgtttctgggattttaccctttttgttctatccacaagagttaccagggtgcatctggctgtcccatattgactctagttttagTCAGGGGTTCATGGAAGGATATTTGCAGCAGATACGGGCAGGCCTGTACCCGGCTCAGTGATGATAAAGGGCATTGATTCCAAG

Basic information

species Zea mays
transcript GRMZM2G106683_T02
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5081117|gb|AI738163.1|AI738163
EST:     GGG-ACACAATAGGATGAGTATGCTCAATCTTCTAGCAAGCCTAATAAAG                         TCAGGGGTTCATGGAAGGATATTTGCAGCAGATACGGGCAGGCCTGTACCC
genomic: GGGAACACAATAGGATGAGTATGCTCAATCTTCTAGCAAGCCTAATAAAGgtaatatgtt ... ctagttttagTCAGGGGTTCATGGAAGGATATTTGCAGCAGATACGGGCAGGCCTGTACCC
EST: gi|78110109|gb|DV528524.1|DV528524
EST:     CAAGCCTAATAAAG                         TCAGGGGTTCATGGAAGGATATTTGCAGCAGATACGGGCAGGCCTGTACCC
genomic: CAAGCCTAATAAAGgtaatatgtt ... ctagttttagTCAGGGGTTCATGGAAGGATATTTGCAGCAGATACGGGCAGGCCTGTACCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atccacaagagttaccagggtgcatctggctgtcccatattgactctagttttagTCAGGGGTTCATGGAAGGATATTTGCAGCAGATACGGGCAGGCCTGTACCCGGCTCAGTGATGATAAAGGGCATTGATTCCAAG
                                     tattgac  putative branch site (score: 2)
                                              tagtttta  TA-rich tract