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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttccagttttcactgcgtctgtccctgaacagggatagcttaatggttcagtaagacagaattagtcgcttgtttgatgccaggtcttagagagtagaactcttgactcgcaatttctttttttttactgctttacccttcttccagGACTAGAGCAGAAGTCTCCAGTTCTAGATGCTGGTCTTCTTGGGCTACTCAGATGGCTGAGAACACTTGCATAGGACGGTATATTAGACAAAGTGGGAAA

Basic information

species Zea mays
transcript GRMZM2G106531_T02
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G106531_T02 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os11g36440.1 (Oryza sativa), 3'ss of exon 12
gtaagttccagttttcactgcgtctgtccctgaacagggatagcttaatggttcagtaagacagaat-tagtcgcttgtttgatgccaggtcttagagagta------------gaac------------tcttgactcgcaatttctttttttttactgctttacccttcttccagGACTAGAGCAGAAGTCTCCAGTTCTAGATGCTGGTCTTCTTGGGCTACTCAGATGGCTGAGAACACTTGCATAGGACGGTATATTAGACAAAGTGGGAAA
|||||||| || || ||||        ||   ||       || || | || |  | |        | |  | |  | || |   | | |   |||||||              ||||            | ||| |    || |    ||| ||| |||||||   | || ||||||||| || || |  ||||| || |||||||| |||||||||||||| ||||||||| ||||||| ||||| ||||| | ||      |  |  |||   |
gtaagttc-agattccactaacatccccctaaaatgaactgagtttgaaggattgggagctttatttatgttagggtcttagggactaagaagtagagagatttgtctgctgatgaacaacataagctgatattggcagaaaaatgacgtttgtttgctgctttgatcctcatccagGACTGGAACAAAGATCTCCTGTACTAGATGCGGGTCTTCTTGGGCTCCTCAGATGGTTGAGAACGCTTGCTTAGGATGATACGGACAAAGATTTGGTTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|160481285|gb|EY254207.1|EY254207
EST:     TGTAGCATTCTCAGGGATCATGTGTGCTCACCGAGTTGCTGCAGATATTG                         GACTAGAGCAGAAGTCTCCAGTTCTAGATGCTGGTCTTCTTGGGCTACTCA
genomic: TGTAGCATTCTCAGGGATCATGTGTGCTCACCGAGTTGCTGCAGATATTGgtaagttcca ... cttcttccagGACTAGAGCAGAAGTCTCCAGTTCTAGATGCTGGTCTTCTTGGGCTACTCA
EST: gi|211115940|gb|FL480222.1|FL480222
EST:     GGGATCATGTGTGCTCACCGAGTTGCTGCAGATATTG                         GACTAGAGCAGAAGTCTCCAGTTCTAGATGCTGGTCTTCTTGGGCTACTCA
genomic: GGGATCATGTGTGCTCACCGAGTTGCTGCAGATATTGgtaagttcca ... cttcttccagGACTAGAGCAGAAGTCTCCAGTTCTAGATGCTGGTCTTCTTGGGCTACTCA
EST: gi|161587309|gb|EY962421.1|EY962421
EST:     TGTAGCATTCTCAGGGATCATGTGTGCTCACCGAGTTGCTGCAGATATTG                         GACTAGAGCAG
genomic: TGTAGCATTCTCAGGGATCATGTGTGCTCACCGAGTTGCTGCAGATATTGgtaagttcca ... cttcttccagGACTAGAGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtagaactcttgactcgcaatttctttttttttactgctttacccttcttccagGACTAGAGCAGAAGTCTCCAGTTCTAGATGCTGGTCTTCTTGGGCTACTCAGATGGCTGAGAACACTTGCATAGGACGGTATATTAGACAAAGTGGGAAA
        tcttgac  putative branch site (score: 3)
                  caatttcttttttttt  putative PPT
                   aatttcttttttttta  TA-rich tract