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...attatataatgttcctgctgtaaggatctctcatcccatattcaattaacgtgaacaaatattctaactataaattaacaagtttgagatttttttgcagTGCACTGGAGCCATCTTCTCTAGCTAAAGCTATATATCCGGTTTTAATATCGTATTCCTCGCCTGACAAGCAAGCATTCCCACGACACACTCTCAGCCGT
species | Zea mays |
transcript | GRMZM2G106140_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GAAGAAGGTGTACACCCAGATTACAGGATATATCTACAATGCCTTTTCAG TGCACTGGAGCCATCTTCTTTAGCTAAAGCTATATATCCGGTTTTAATATCEST: gi|60341248|gb|DN208221.1|DN208221
genomic: GAAGAAGGTGTACACCCAGATTACAGGATATATCTACAATGCCTTTTCAGgttcgtattg ... ttttttgcagTGCACTGGAGCCATCTTCTCTAGCTAAAGCTATATATCCGGTTTTAATATC
EST: CACCCAGATTACAGGATATATCTACAATGCCTTTTCAG TGCACTGGAGCCATCTTCTTTAGCTAAAGCTATATATCCGGTTTTAATATCEST: gi|85152348|gb|DW587703.1|DW587703
genomic: CACCCAGATTACAGGATATATCTACAATGCCTTTTCAGgttcgtattg ... ttttttgcagTGCACTGGAGCCATCTTCTCTAGCTAAAGCTATATATCCGGTTTTAATATC
EST: GAAGAAGGTGTACACCCAGATTACAGGATATATCTACAATGCCTTTTCAG TGCACTGGAGCCATCTTCTCTAGCTAAAGCTATATATCCGGTTTTAATATCEST: gi|84977630|gb|DW476052.1|DW476052
genomic: GAAGAAGGTGTACACCCAGATTACAGGATATATCTACAATGCCTTTTCAGgttcgtattg ... ttttttgcagTGCACTGGAGCCATCTTCTCTAGCTAAAGCTATATATCCGGTTTTAATATC
EST: GAAGAAGGTGTACACCCAGATTACAGGATATATCTACAATGCCTTTTCAG TGCACTGGAGCCATCTTCTCTAGCTAAAGCTATATATCCGGTTTTAATATCEST: gi|71299985|gb|DR786056.1|DR786056
genomic: GAAGAAGGTGTACACCCAGATTACAGGATATATCTACAATGCCTTTTCAGgttcgtattg ... ttttttgcagTGCACTGGAGCCATCTTCTCTAGCTAAAGCTATATATCCGGTTTTAATATC
EST: GAAGAAGGTGTACACCCAGATTACAGGATATATCTACAATGCCTTTTCAG TGCACTGGAGCCATCTTCTCTAGCTAAAGCTATATATCCGGTTTTAATATCEST: gi|211413025|gb|FL028965.1|FL028965
genomic: GAAGAAGGTGTACACCCAGATTACAGGATATATCTACAATGCCTTTTCAGgttcgtattg ... ttttttgcagTGCACTGGAGCCATCTTCTCTAGCTAAAGCTATATATCCGGTTTTAATATC
EST: GAAGAAGGTGTACACCCAGATTACAGGATATATCTACAATGCCTTTTCAG TGCACTGGAGCCATCTTCTCTAGCTEST: gi|116823383|gb|EC866904.1|EC866904
genomic: GAAGAAGGTGTACACCCAGATTACAGGATATATCTACAATGCCTTTTCAGgttcgtattg ... ttttttgcagTGCACTGGAGCCATCTTCTCTAGCT
EST: GAAGAAGGTGTACACCCAGATTACAGGATATATCTACAATGCCTTTTCAG TGCACTGGAGCCATCTTCTCTAGCTAAAGCTATATATCCGG-TTTAATATC
genomic: GAAGAAGGTGTACACCCAGATTACAGGATATATCTACAATGCCTTTTCAGgttcgtattg ... ttttttgcagTGCACTGGAGCCATCTTCTCTAGCTAAAGCTATATATCCGGTTTTAATATC
ttaacgtgaacaaatattctaactataaattaacaagtttgagatttttttgcagTGCACTGGAGCCATCTTCTCTAGCTAAAGCTATATATCCGGTTTTAATATCGTATTCCTCGCCTGACAAGCAAGCATTCCCACGACACACTCTCAGCCGT
tttttttgc CT-rich tract
aaatattctaactata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attatataatgttcctgctgtaaggatctctcatcccatattcaattaacgtgaacaaatattctaactataaattaacaagtttgagatttttttgcagTGCACTGGAGCCATCTTCTCTAGCTAAAGCTATATATCCGGTTTTAATATCGTATTCCTCGCCTGACAAGCAAGCATTCCCACGACACACTCTCAGCCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - -cctgctg
- - - - - - - - - - - - - - - -catccca
- - - - - - - - - - - - - - - - - - - - - - - - - - gaacaaa