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gtatatgtgttcccatgttcttttctccataactctatatcgactttgtgttcctttgatcatgttacccctcgtcttttatccagAAATACAACCCCGAAGCTACGGATCCATATCTGAGTGGTGCACTCGCTTCAGTCCTCTGGGAGCTCAGCCTCCTAGAGAAGCATTATGACATCTCAGTTT
species | Zea mays |
transcript | GRMZM2G104983_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ATATGTTGGAAAATGATTCTGGTGGCGGTTCTCTGTCTTGCTTAGTTGCG AAATACAACCCCGAAGCTACGGATCCATATCTGAGTGGTGCACTCGCTTCAEST: gi|6994023|gb|AW453237.1|AW453237
genomic: ATATGTTGGAAAATGATTCTGGTGGCGGTTCTCTGTCTTGCTTAGTTGCGgtatatgtgt ... ttttatccagAAATACAACCCCGAAGCTACGGATCCATATCTGAGTGGTGCACTCGCTTCA
EST: ATATGTTGGAAAATGATTCTGGTGGCGGTTCTCTGTCTTGCTTAGTTGCG AAATACAACCCCGAAGCTACGGATCCATATCTGAGTGGNGCACTCGCTTCAEST: gi|211373649|gb|FL261178.1|FL261178
genomic: ATATGTTGGAAAATGATTCTGGTGGCGGTTCTCTGTCTTGCTTAGTTGCGgtatatgtgt ... ttttatccagAAATACAACCCCGAAGCTACGGATCCATATCTGAGTGGTGCACTCGCTTCA
EST: ATATGTTGGAAAATGATTCTGGTGGCGGTTCTCTGTCTTGCTTAGTTGCG AAATACAACCCCGAAGCTACGGATCCATATCTGAGTGGTGCACTCGCTTCAEST: gi|32834730|gb|CD974408.1|CD974408
genomic: ATATGTTGGAAAATGATTCTGGTGGCGGTTCTCTGTCTTGCTTAGTTGCGgtatatgtgt ... ttttatccagAAATACAACCCCGAAGCTACGGATCCATATCTGAGTGGTGCACTCGCTTCA
EST: ATATGTTGGAAAATGATTCTGGTGGCGGTTCTCTGTCTTGCTTAGTTGCG AAATACAACCCCGAAGCTACGGATCCATATCTGAGTGGTGCACTCGCTTCAEST: gi|211373650|gb|FL261179.1|FL261179
genomic: ATATGTTGGAAAATGATTCTGGTGGCGGTTCTCTGTCTTGCTTAGTTGCGgtatatgtgt ... ttttatccagAAATACAACCCCGAAGCTACGGATCCATATCTGAGTGGTGCACTCGCTTCA
EST: ATATGTTGGAAAATGATTCTGGTGGCGGTTCTCTGTCTTGCTTAGTTGCG AAATACAACCCCGAAGCTACGGATCCATATCTGAGTGGTGCACTCGCTTCAEST: gi|211216216|gb|FL457816.1|FL457816
genomic: ATATGTTGGAAAATGATTCTGGTGGCGGTTCTCTGTCTTGCTTAGTTGCGgtatatgtgt ... ttttatccagAAATACAACCCCGAAGCTACGGATCCATATCTGAGTGGTGCACTCGCTTCA
EST: ATATGTTGGAAAATGATTCTGGTGGCGGTTCTCTGTCTTGCTTAGTTGCG AAATACAACCCCGAAGCTACGGATCCATATCTGAGTGGTGCACTCGCTTCAEST: gi|76014613|gb|DT941783.1|DT941783
genomic: ATATGTTGGAAAATGATTCTGGTGGCGGTTCTCTGTCTTGCTTAGTTGCGgtatatgtgt ... ttttatccagAAATACAACCCCGAAGCTACGGATCCATATCTGAGTGGTGCACTCGCTTCA
EST: ATATGTTGGAAAATGATTCTGGTGGCGGTTCTCTGTCTTGCTTAGTTGCG AAATACAACCCCGAAGCTACGGATCCATATCTGAGTGGTGCACTCGCTTCAEST: gi|211373651|gb|FL261180.1|FL261180
genomic: ATATGTTGGAAAATGATTCTGGTGGCGGTTCTCTGTCTTGCTTAGTTGCGgtatatgtgt ... ttttatccagAAATACAACCCCGAAGCTACGGATCCATATCTGAGTGGTGCACTCGCTTCA
EST: ATATGTTGGAAAATGATTCTGGTGGCGGTTCTCTGTCTTGCTTAGTTGCG AAATACAACCCCGAAGCTACGGATCCATATCTGAGTGGTGCACTCGCTTCA
genomic: ATATGTTGGAAAATGATTCTGGTGGCGGTTCTCTGTCTTGCTTAGTTGCGgtatatgtgt ... ttttatccagAAATACAACCCCGAAGCTACGGATCCATATCTGAGTGGTGCACTCGCTTCA
actctatatcgactttgtgttcctttgatcatgttacccctcgtcttttatccagAAATACAACCCCGAAGCTACGGATCCATATCTGAGTGGTGCACTCGCTTCAGTCCTCTGGGAGCTCAGCCTCCTAGAGAAGCATTATGACATCTCAGTTT
cccctcgtcttttatc CT-rich tract
tcttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatgtgttcccatgttcttttctccataactctatatcgactttgtgttcctttgatcatgttacccctcgtcttttatccagAAATACAACCCCGAAGCTACGGATCCATATCTGAGTGGTGCACTCGCTTCAGTCCTCTGGGAGCTCAGCCTCCTAGAGAAGCATTATGACATCTCAGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC