Sequence
atgc intronic sequence ATGC exonic sequencegtaagtttggaccgtactgcatttttactccaaaggttatggcagaggatgcatataatgtcttccaagttttcttgtagGTACCTGCATGAGGTGTGCATGCCGTCTCTTGTTCATAGAAATTTGAAGTCTTCAAACATTCTACTAGATGAGGAGCATAATCCACACCTATCTGACTGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G103070_T01 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os02g09740.2 (Oryza sativa), 3'ss of exon 12
gtaagttt---ggaccgtactgcatttttactcca--------aaggtt--atggcag--aggatgcatataatgtcttccaagttttcttgtagGTACCTGCATGAGGTGTGCATGCCGTCTCTTGTTCATAGAAATTTGAAGTCTTCAAACATTCTACTAGATGAGGAGCATAATCCACACCTATCTGACTGT
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gtaagttttatgaatcatacatcattttttgttcaccttttctgatgttttacagcagcaggggcacttctaacgtctttcaaaccttctcccagGTACCTGCATGAGGTGTGCTTGCCATCTGTTGTGCATAGAAACTTTAAGTCCTCAAACATCCTACTCGATGAAGAGCATAATCCACATTTATCTGACTGT
upper sequence: GRMZM2G103070_T01 (Zea mays), 3'ss of exon 12
lower sequence: GLYMA09G00970.1 (Glycine max), 3'ss of exon 12
---------------------------------------------------gtaagtt--tggaccgtactgcatttttactcca--aaggtta--tggcagaggatgcata---taatgtctt---ccaagttttct-tgt-agGTACCTGCATGAGGTGTGCATGCCGTCTCTTGTTCATAGAAATTTGAAGTCTTCAAACATTCTACTAGATGAGGAGCATAATCCACACCTATCTGACTGT
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gtatgtttcattcacatctgacatattaagtctctctttggcatggccttgactggctacccgacccccctgt-ttttccctcaagtagagtgagttagcatatcacattcaggctaatttcttgagttatgctttgtatgtcagGTACCTGCATGAAGTGTGCTTGCCTTCTGTTGTACATAGAAATTTCAAATCTGCAAATATATTACTTGATGAGGAGCTCAATCCTCACCTGTCTGACTGT
upper sequence: GRMZM2G103070_T01 (Zea mays), 3'ss of exon 12
lower sequence: GLYMA15G11820.1 (Glycine max), 3'ss of exon 12
---------------------------------------------------------------------------gtaagtttggaccgtactgcatttttactccaaaggttatggcag-aggatgcatataat---gtcttccaagtttt--cttgt-----agGTACCTGCATGAGGTGTGCATGCCGTCTCTTGTTCATAGAAATTTGAAGTCTTCAAACATTCTACTAGATGAGGAGCATAATCCACACCTATCTGACTGT
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gtatgttacattcacatatctgacatattaagtctctccttggcatggccttgactggctactccacccccctgcttttccctcaagtatatt-tgttttagccttgtagagtgagttagcatgtcacattcaggctaatttctcaagttatgctttgtctatcagGTACCTGCATGAAGTGTGCTTGCCTTCTGTTGTACATAGAAATTTCAAATCTGCAAATATATTACTCGATGAGGAGCTCAATCCTCACCTGTCTGACTGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tactccaaaggttatggcagaggatgcatataatgtcttccaagttttcttgtagGTACCTGCATGAGGTGTGCATGCCGTCTCTTGTTCATAGAAATTTGAAGTCTTCAAACATTCTACTAGATGAGGAGCATAATCCACACCTATCTGACTGT
ttttcttgt CT-rich tract
atataatgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtttggaccgtactgcatttttactccaaaggttatggcagaggatgcatataatgtcttccaagttttcttgtagGTACCTGCATGAGGTGTGCATGCCGTCTCTTGTTCATAGAAATTTGAAGTCTTCAAACATTCTACTAGATGAGGAGCATAATCCACACCTATCTGACTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA