1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtattttgtttattctaccagcaacctagccacatcaataattttctggatgaaagttcaccaagaaatgaagcaatttctctgttttacaaacactttattttttgtaaggataaactgagccgtttgtccttgagaagatctcatcatggcgtcaatgtcttgttgcagGTTCTGAAATCCGATGTTGAGGCTGCATTGCAAGTTCTAAATTTTGCAATATACCACAAGGAATTGACTGAGATGGAAGAGAGAGAACAGAGAGAAATGG
species | Zea mays |
transcript | GRMZM2G100639_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CCATAATTCGTCTATCGACAGCTCATGCCAAGATGAAACTGAGGCATGAG GTTCTGAAATCCGATGT-GAGGCTEST: gi|20803427|gb|BQ294477.1|BQ294477
genomic: CCATAATTCGTCTATCGACAGCTCATGCCAAGATGAAACTGAGGCATGAGgtattttgtt ... cttgttgcagGTTCTGAAATCCGATGTTGAGGCT
EST: CCATAATTCGTCTATCGACAGCTCATGCCAAGATGAAACTGAGGCATGAG GTTCTGAAATCCGATGTTGAGGCTGCATTGCAAGTTCTAAATTTTGCAATAEST: gi|9461361|gb|BE453695.1|BE453695
genomic: CCATAATTCGTCTATCGACAGCTCATGCCAAGATGAAACTGAGGCATGAGgtattttgtt ... cttgttgcagGTTCTGAAATCCGATGTTGAGGCTGCATTGCAAGTTCTAAATTTTGCAATA
EST: CATGCCAAGATGAAACTGAGGCATGAG GTTCTGAAATCCGATGTTGAGGCTGCATTGCAAGTTCTAAATTTTGCAATA
genomic: CATGCCAAGATGAAACTGAGGCATGAGgtattttgtt ... cttgttgcagGTTCTGAAATCCGATGTTGAGGCTGCATTGCAAGTTCTAAATTTTGCAATA
actgagccgtttgtccttgagaagatctcatcatggcgtcaatgtcttgttgcagGTTCTGAAATCCGATGTTGAGGCTGCATTGCAAGTTCTAAATTTTGCAATATACCACAAGGAATTGACTGAGATGGAAGAGAGAGAACAGAGAGAAATGG
tcttgtt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttgtttattctaccagcaacctagccacatcaataattttctggatgaaagttcaccaagaaatgaagcaatttctctgttttacaaacactttattttttgtaaggataaactgagccgtttgtccttgagaagatctcatcatggcgtcaatgtcttgttgcagGTTCTGAAATCCGATGTTGAGGCTGCATTGCAAGTTCTAAATTTTGCAATATACCACAAGGAATTGACTGAGATGGAAGAGAGAGAACAGAGAGAAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA