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gtaacgtctgcttccctctaaagccactaatctgtggttcttctgtagcttaacttaactatcacttcaaattacagATTTCTTCTTTTGGGATGACCCTAAGCCTTCTTGTGGTTGCTGTTGTATTTTACATCAAG
species | Zea mays |
transcript | GRMZM2G098679_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GCTGGACGGAGAATCCTCCTTATT ATTTCTTCTTTGGGGATGACCCTAAGCCTTCTTGTGGTTGCTGTTGTATTTEST: gi|60401580|gb|DN234387.1|DN234387
genomic: GCTGGACGGAGAATCCTCCTTATCgtaacgtctg ... caaattacagATTTCTTCTTTTGGGATGACCCTAAGCCTTCTTGTGGTTGCTGTTGTATTT
EST: CTGTTACGACCAAGATCTTGGACAGGGCTGGACGGAGAATCCTCCTTATC ATTTCTTCTTTTGGGATGACCCTAAGCCTTCTTGTGGTTGCTGTTGTATTTEST: gi|211280254|gb|FL478194.1|FL478194
genomic: CTGTTACGACCAAGATCTTGGACAGGGCTGGACGGAGAATCCTCCTTATCgtaacgtctg ... caaattacagATTTCTTCTTTTGGGATGACCCTAAGCCTTCTTGTGGTTGCTGTTGTATTT
EST: CTGTTACAACCAAGATCTTGGACAGGGCTGGACGGAGAATCCTCCTTATT ATTTCTTCTTTTGGGATGACCCTAAGCCTTCTTGTGGTTGCTGTTGTATTTEST: gi|40333857|gb|CK367927.1|CK367927
genomic: CTGTTACGACCAAGATCTTGGACAGGGCTGGACGGAGAATCCTCCTTATCgtaacgtctg ... caaattacagATTTCTTCTTTTGGGATGACCCTAAGCCTTCTTGTGGTTGCTGTTGTATTT
EST: CTTTTACAACCAAGATCTTGGTCAGGGCTGGACGGAGAATCCTCCTTATT ATTTCTTCTTTTGGGATGACCCTAAGCCTTCTTGTGGTTGCTGTTGTATTTEST: gi|148953878|gb|EC899256.2|EC899256
genomic: CTGTTACGACCAAGATCTTGGACAGGGCTGGACGGAGAATCCTCCTTATCgtaacgtctg ... caaattacagATTTCTTCTTTTGGGATGACCCTAAGCCTTCTTGTGGTTGCTGTTGTATTT
EST: CAAGATCTTGGACAGGGCTGGACGGAGAATCCTCCTTATC ATTTCTTCTTTTGGGATGACCCTAAGCCTTCTTGTGGTTGCTGTTGTATTTEST: gi|211084269|gb|FL474824.1|FL474824
genomic: CAAGATCTTGGACAGGGCTGGACGGAGAATCCTCCTTATCgtaacgtctg ... caaattacagATTTCTTCTTTTGGGATGACCCTAAGCCTTCTTGTGGTTGCTGTTGTATTT
EST: CTGTTACAACCAAGATCTTGGACAGGGCTGGACGGAGAATCCTCCTTATT ATTTCTTCTTTTGGGATGACCCTAAGCCTTCTTGTGGTTGCTGTTGTATTTEST: gi|60350539|gb|DN217512.1|DN217512
genomic: CTGTTACGACCAAGATCTTGGACAGGGCTGGACGGAGAATCCTCCTTATCgtaacgtctg ... caaattacagATTTCTTCTTTTGGGATGACCCTAAGCCTTCTTGTGGTTGCTGTTGTATTT
EST: CTGTTACGACCAAGATCTTGGACAGGGCTGGACGGAGAATCCTCCTTATC ATTTCTTCTTTTGGGATGACCCTAAGCCTTCTTGTGGTTGCTGTTGTATTT
genomic: CTGTTACGACCAAGATCTTGGACAGGGCTGGACGGAGAATCCTCCTTATCgtaacgtctg ... caaattacagATTTCTTCTTTTGGGATGACCCTAAGCCTTCTTGTGGTTGCTGTTGTATTT
gccactaatctgtggttcttctgtagcttaacttaactatcacttcaaattacagATTTCTTCTTTTGGGATGACCCTAAGCCTTCTTGTGGTTGCTGTTGTATTTTACATCAAG
tcacttc CT-rich tract
ttaacttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacgtctgcttccctctaaagccactaatctgtggttcttctgtagcttaacttaactatcacttcaaattacagATTTCTTCTTTTGGGATGACCCTAAGCCTTCTTGTGGTTGCTGTTGTATTTTACATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT