1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tcatgctttaatggaacatttctgagattttaacacactgattttttttttgccaaaaactatacttcctgatgagtgactgtctggtatgttgctgcagCTATCTCAGCGTACAATCTCAGGATCTCTCTTGAAATATCTCTCTAAGCTACAGGTGAAGTTCACTTTTGGATTTGAAAAGGTTTATACTGCAGTTATGA
species | Zea mays |
transcript | GRMZM2G098078_T04 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GTACTATCCGTGAACTGACATTAAAGTCAATGCTCATATTAGCACCAAAA CTATCTCAGCGTACAATCTCAGGATCTCTCTTGAAATATCTCTCTAAACTAEST: gi|32908842|gb|CF013655.1|CF013655
genomic: GTACTATCCGTGAACTGACATTAAAGTCAATGCTCATATTAGCACCAAAAgtgagttttg ... gttgctgcagCTATCTCAGCGTACAATCTCAGGATCTCTCTTGAAATATCTCTCTAAGCTA
EST: GTACTATCCGTGAACTGACATTAAAGTCAATGCTCATATTAGCACCAAAA CTATCTCAGCGTACAATCTCAGGATCTCTCTTGAAATATCTCTCTAAACTA
genomic: GTACTATCCGTGAACTGACATTAAAGTCAATGCTCATATTAGCACCAAAAgtgagttttg ... gttgctgcagCTATCTCAGCGTACAATCTCAGGATCTCTCTTGAAATATCTCTCTAAGCTA
ttttttgccaaaaactatacttcctgatgagtgactgtctggtatgttgctgcagCTATCTCAGCGTACAATCTCAGGATCTCTCTTGAAATATCTCTCTAAGCTACAGGTGAAGTTCACTTTTGGATTTGAAAAGGTTTATACTGCAGTTATGA
tcctgat putative branch site (score: 98)
aaaaactata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatgctttaatggaacatttctgagattttaacacactgattttttttttgccaaaaactatacttcctgatgagtgactgtctggtatgttgctgcagCTATCTCAGCGTACAATCTCAGGATCTCTCTTGAAATATCTCTCTAAGCTACAGGTGAAGTTCACTTTTGGATTTGAAAAGGTTTATACTGCAGTTATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
-catgctt
- - - - - - - - - tttctga
- - - - - - - - - - - - - - - -aacacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtctgg